miRNA display CGI


Results 41 - 60 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 12432 0.75 0.322421
Target:  5'- gUGCGGGCuCCAAGGcgccGGCacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUUCU----CUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133972 0.75 0.329859
Target:  5'- aGauaAGGCGCC--GGGGCUgggagCGCGCGCg -3'
miRNA:   3'- aCg--UCCGCGGuuCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101030 0.75 0.329859
Target:  5'- gGCAGGCGCCGc-AGGCUcCGCcgccGCGCg -3'
miRNA:   3'- aCGUCCGCGGUucUCUGAaGCG----CGCG- -5'
6357 5' -57.2 NC_001847.1 + 114152 0.75 0.329859
Target:  5'- cGCGcGGUGCCGauugGGAGGCcuagUGCGCGCg -3'
miRNA:   3'- aCGU-CCGCGGU----UCUCUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 46518 0.75 0.329859
Target:  5'- aGCGGcaGCGCuCGGGGGGCggcggcggCGCGCGCg -3'
miRNA:   3'- aCGUC--CGCG-GUUCUCUGaa------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 127294 0.75 0.337423
Target:  5'- cUGCAGGCGCCAccggcggugccGGAGACacggCGaccgGCGCc -3'
miRNA:   3'- -ACGUCCGCGGU-----------UCUCUGaa--GCg---CGCG- -5'
6357 5' -57.2 NC_001847.1 + 74382 0.75 0.340483
Target:  5'- gGUagAGGCGCUggGGGACcgcgcggccgccgCGCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGuuCUCUGaa-----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 40158 0.75 0.352139
Target:  5'- cGCAGcuGCGCCAaagccgcGGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUC--CGCGGU-------UCUCUGAaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 36013 0.75 0.352926
Target:  5'- cGCGGGCGUgGugcuGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUCCGCGgUu---CUCUGAaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 79989 0.75 0.352926
Target:  5'- cGCGucuGGcCGCUggGGGGCUcuacgCGCGCGCg -3'
miRNA:   3'- aCGU---CC-GCGGuuCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 96522 0.75 0.352926
Target:  5'- aGUGGGCGgCAAcGGACcgCGCGCGCc -3'
miRNA:   3'- aCGUCCGCgGUUcUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33562 0.75 0.352926
Target:  5'- gGCAGaCGCCGcGGAGGCggcCGUGCGCg -3'
miRNA:   3'- aCGUCcGCGGU-UCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 91662 0.75 0.352926
Target:  5'- gGC-GGCGCgGcGGGACgcgaUCGCGCGCu -3'
miRNA:   3'- aCGuCCGCGgUuCUCUGa---AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 76888 0.74 0.35847
Target:  5'- gGguGGCGCCGAacccuaauccggccGAG-C-UCGCGCGCa -3'
miRNA:   3'- aCguCCGCGGUU--------------CUCuGaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 52553 0.74 0.360865
Target:  5'- -aCAGGCGCCGccgcGAGcGCUUCGCGCacGCg -3'
miRNA:   3'- acGUCCGCGGUu---CUC-UGAAGCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 83580 0.74 0.360865
Target:  5'- gGUAGGCGCCcgcgagcccGAGcACgcgCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGuu-------CUC-UGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 47685 0.74 0.368927
Target:  5'- aGCGGGCgcgcGCCGcGGGGCcguugagCGCGCGCa -3'
miRNA:   3'- aCGUCCG----CGGUuCUCUGaa-----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 106786 0.74 0.368927
Target:  5'- cGCgaGGGCGCCGGGGGcCcggGCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGUUCUCuGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101559 0.74 0.376288
Target:  5'- cGCAGGcCGCCGAGcccgggccgcgccAGACgcccccCGCGUGCg -3'
miRNA:   3'- aCGUCC-GCGGUUC-------------UCUGaa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 40922 0.74 0.377112
Target:  5'- cGCGGGCGCCccgccgcGAG-CUccgcCGCGCGCa -3'
miRNA:   3'- aCGUCCGCGGuu-----CUCuGAa---GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.