miRNA display CGI


Results 21 - 40 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 66997 0.77 0.242909
Target:  5'- gGCGcGGCGCCGgagaAGGGGCagaCGCGCGCu -3'
miRNA:   3'- aCGU-CCGCGGU----UCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 96631 0.77 0.254932
Target:  5'- cGCGGGgGCCGGcGGGuACgcgUCGUGCGCg -3'
miRNA:   3'- aCGUCCgCGGUU-CUC-UGa--AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 92361 0.77 0.254932
Target:  5'- gGC-GGCGCCGcGAGGCUUUuaGCGCa -3'
miRNA:   3'- aCGuCCGCGGUuCUCUGAAGcgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 22100 0.77 0.254932
Target:  5'- gGCAGGCGCgCcGGGGGCgacagCGgGCGCg -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaa---GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 124913 0.77 0.254932
Target:  5'- gGCAGGCGCgCcGGGGGCgacagCGgGCGCg -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaa---GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 18403 0.77 0.261123
Target:  5'- cUGCGGGC-CCGcGGGGCUgucgaacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUuCUCUGAa--------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 132982 0.77 0.261123
Target:  5'- cGCGGGCGCUgcGAGACcuggUGCuGCGCa -3'
miRNA:   3'- aCGUCCGCGGuuCUCUGaa--GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 108360 0.77 0.267437
Target:  5'- cUGC-GGCGCgCAGGAGGg--CGCGCGCa -3'
miRNA:   3'- -ACGuCCGCG-GUUCUCUgaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 110988 0.77 0.267437
Target:  5'- gGCuGcGCGCCGuucGAgGACUUUGCGCGCa -3'
miRNA:   3'- aCGuC-CGCGGUu--CU-CUGAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 102597 0.77 0.267437
Target:  5'- cGCccaGCGCCGAG-GGCUgCGCGCGCa -3'
miRNA:   3'- aCGuc-CGCGGUUCuCUGAaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 77664 0.77 0.273225
Target:  5'- cGCGGGCGCCGAgguacugcuggccGAGcGCUUCaaggcggcguGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGUU-------------CUC-UGAAG----------CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 32841 0.76 0.293928
Target:  5'- cGCGuGGcCGCCGAGAccgcGGCgcUCGCGCGCg -3'
miRNA:   3'- aCGU-CC-GCGGUUCU----CUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 42113 0.76 0.293928
Target:  5'- -cCAGGCGCCGGGGGccGCUUCcCGCGUu -3'
miRNA:   3'- acGUCCGCGGUUCUC--UGAAGcGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34655 0.76 0.300863
Target:  5'- aGCGGcGCGCCgAGGGGGCggcCGCGCaGCg -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa-GCGCG-CG- -5'
6357 5' -57.2 NC_001847.1 + 55368 0.76 0.300863
Target:  5'- cGCGGGCGCC-GGAGACggUCG-GCGa -3'
miRNA:   3'- aCGUCCGCGGuUCUCUGa-AGCgCGCg -5'
6357 5' -57.2 NC_001847.1 + 122679 0.76 0.300863
Target:  5'- cGCGGGaaGCCGcGGAGGCUccgcCGCGCGCg -3'
miRNA:   3'- aCGUCCg-CGGU-UCUCUGAa---GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3974 0.76 0.315109
Target:  5'- gGCgaGGGCGCCGGGGGcCgg-GCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGUUCUCuGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 82345 0.76 0.315109
Target:  5'- gUGCGcGGCGCCAGGGcGcACUgcacaugagCGCGCGCc -3'
miRNA:   3'- -ACGU-CCGCGGUUCU-C-UGAa--------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 63164 0.76 0.315109
Target:  5'- cGCAGGCGCgCAcgucGGucGCggUCGCGCGCc -3'
miRNA:   3'- aCGUCCGCG-GU----UCucUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 24515 0.76 0.315109
Target:  5'- cGUGGGCGUC--GGGGC-UCGCGCGCu -3'
miRNA:   3'- aCGUCCGCGGuuCUCUGaAGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.