miRNA display CGI


Results 21 - 40 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 33517 0.83 0.113313
Target:  5'- gGCGGGCGCCGccgcGGAGGCgcCGgGCGCg -3'
miRNA:   3'- aCGUCCGCGGU----UCUCUGaaGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 22195 0.74 0.393844
Target:  5'- cGCGGGCGCUggGccguGCUgaagCGCGUGCc -3'
miRNA:   3'- aCGUCCGCGGuuCuc--UGAa---GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 35470 0.74 0.392149
Target:  5'- cGCgagAGGCGCU-AGAGGCggcaaaggcggCGCGCGCg -3'
miRNA:   3'- aCG---UCCGCGGuUCUCUGaa---------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 12432 0.75 0.322421
Target:  5'- gUGCGGGCuCCAAGGcgccGGCacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUUCU----CUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 124913 0.77 0.254932
Target:  5'- gGCAGGCGCgCcGGGGGCgacagCGgGCGCg -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaa---GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 55451 0.73 0.419826
Target:  5'- cGCcuGGCGCCGGcGGGGCgcgCGCcGCGCu -3'
miRNA:   3'- aCGu-CCGCGGUU-CUCUGaa-GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 3677 0.73 0.41105
Target:  5'- aGCAGGcCGCCGcGAGcCU--GCGCGCa -3'
miRNA:   3'- aCGUCC-GCGGUuCUCuGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 103110 0.79 0.196509
Target:  5'- cGCGGGCGCCGuccccgcgccccgccGGAG-CUUCGCGCu- -3'
miRNA:   3'- aCGUCCGCGGU---------------UCUCuGAAGCGCGcg -5'
6357 5' -57.2 NC_001847.1 + 96522 0.75 0.352926
Target:  5'- aGUGGGCGgCAAcGGACcgCGCGCGCc -3'
miRNA:   3'- aCGUCCGCgGUUcUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 40158 0.75 0.352139
Target:  5'- cGCAGcuGCGCCAaagccgcGGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUC--CGCGGU-------UCUCUGAaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 77222 0.79 0.194552
Target:  5'- cGCGGGcCGCCGGGcccGGACUUgGCGCGg -3'
miRNA:   3'- aCGUCC-GCGGUUC---UCUGAAgCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 33841 0.79 0.189732
Target:  5'- cGCGGGCGCgCAgagcgcAGAgGACUgCGCGCGCu -3'
miRNA:   3'- aCGUCCGCG-GU------UCU-CUGAaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 59863 0.73 0.428715
Target:  5'- cGCGGuCGCCGAGGGcCggCGCGCGg -3'
miRNA:   3'- aCGUCcGCGGUUCUCuGaaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 28086 0.73 0.428715
Target:  5'- gUGCuguGGCGCCugcccGGGGC--CGCGCGCg -3'
miRNA:   3'- -ACGu--CCGCGGuu---CUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101559 0.74 0.376288
Target:  5'- cGCAGGcCGCCGAGcccgggccgcgccAGACgcccccCGCGUGCg -3'
miRNA:   3'- aCGUCC-GCGGUUC-------------UCUGaa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34655 0.76 0.300863
Target:  5'- aGCGGcGCGCCgAGGGGGCggcCGCGCaGCg -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa-GCGCG-CG- -5'
6357 5' -57.2 NC_001847.1 + 77664 0.77 0.273225
Target:  5'- cGCGGGCGCCGAgguacugcuggccGAGcGCUUCaaggcggcguGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGUU-------------CUC-UGAAG----------CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 64874 0.79 0.185017
Target:  5'- cGCAGGCgcgcGCCGAGAGcaACgcCGCGCGCc -3'
miRNA:   3'- aCGUCCG----CGGUUCUC--UGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 74382 0.75 0.340483
Target:  5'- gGUagAGGCGCUggGGGACcgcgcggccgccgCGCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGuuCUCUGaa-----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 79989 0.75 0.352926
Target:  5'- cGCGucuGGcCGCUggGGGGCUcuacgCGCGCGCg -3'
miRNA:   3'- aCGU---CC-GCGGuuCUCUGAa----GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.