Results 21 - 40 of 640 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 33517 | 0.83 | 0.113313 |
Target: 5'- gGCGGGCGCCGccgcGGAGGCgcCGgGCGCg -3' miRNA: 3'- aCGUCCGCGGU----UCUCUGaaGCgCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 22195 | 0.74 | 0.393844 |
Target: 5'- cGCGGGCGCUggGccguGCUgaagCGCGUGCc -3' miRNA: 3'- aCGUCCGCGGuuCuc--UGAa---GCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 35470 | 0.74 | 0.392149 |
Target: 5'- cGCgagAGGCGCU-AGAGGCggcaaaggcggCGCGCGCg -3' miRNA: 3'- aCG---UCCGCGGuUCUCUGaa---------GCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 12432 | 0.75 | 0.322421 |
Target: 5'- gUGCGGGCuCCAAGGcgccGGCacagCGCGCGCg -3' miRNA: 3'- -ACGUCCGcGGUUCU----CUGaa--GCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 124913 | 0.77 | 0.254932 |
Target: 5'- gGCAGGCGCgCcGGGGGCgacagCGgGCGCg -3' miRNA: 3'- aCGUCCGCG-GuUCUCUGaa---GCgCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 55451 | 0.73 | 0.419826 |
Target: 5'- cGCcuGGCGCCGGcGGGGCgcgCGCcGCGCu -3' miRNA: 3'- aCGu-CCGCGGUU-CUCUGaa-GCG-CGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 3677 | 0.73 | 0.41105 |
Target: 5'- aGCAGGcCGCCGcGAGcCU--GCGCGCa -3' miRNA: 3'- aCGUCC-GCGGUuCUCuGAagCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 103110 | 0.79 | 0.196509 |
Target: 5'- cGCGGGCGCCGuccccgcgccccgccGGAG-CUUCGCGCu- -3' miRNA: 3'- aCGUCCGCGGU---------------UCUCuGAAGCGCGcg -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 96522 | 0.75 | 0.352926 |
Target: 5'- aGUGGGCGgCAAcGGACcgCGCGCGCc -3' miRNA: 3'- aCGUCCGCgGUUcUCUGaaGCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 40158 | 0.75 | 0.352139 |
Target: 5'- cGCAGcuGCGCCAaagccgcGGGGGCUgCGCGCGg -3' miRNA: 3'- aCGUC--CGCGGU-------UCUCUGAaGCGCGCg -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 77222 | 0.79 | 0.194552 |
Target: 5'- cGCGGGcCGCCGGGcccGGACUUgGCGCGg -3' miRNA: 3'- aCGUCC-GCGGUUC---UCUGAAgCGCGCg -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 33841 | 0.79 | 0.189732 |
Target: 5'- cGCGGGCGCgCAgagcgcAGAgGACUgCGCGCGCu -3' miRNA: 3'- aCGUCCGCG-GU------UCU-CUGAaGCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 59863 | 0.73 | 0.428715 |
Target: 5'- cGCGGuCGCCGAGGGcCggCGCGCGg -3' miRNA: 3'- aCGUCcGCGGUUCUCuGaaGCGCGCg -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 28086 | 0.73 | 0.428715 |
Target: 5'- gUGCuguGGCGCCugcccGGGGC--CGCGCGCg -3' miRNA: 3'- -ACGu--CCGCGGuu---CUCUGaaGCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 101559 | 0.74 | 0.376288 |
Target: 5'- cGCAGGcCGCCGAGcccgggccgcgccAGACgcccccCGCGUGCg -3' miRNA: 3'- aCGUCC-GCGGUUC-------------UCUGaa----GCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 34655 | 0.76 | 0.300863 |
Target: 5'- aGCGGcGCGCCgAGGGGGCggcCGCGCaGCg -3' miRNA: 3'- aCGUC-CGCGG-UUCUCUGaa-GCGCG-CG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 77664 | 0.77 | 0.273225 |
Target: 5'- cGCGGGCGCCGAgguacugcuggccGAGcGCUUCaaggcggcguGCGCGCg -3' miRNA: 3'- aCGUCCGCGGUU-------------CUC-UGAAG----------CGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 64874 | 0.79 | 0.185017 |
Target: 5'- cGCAGGCgcgcGCCGAGAGcaACgcCGCGCGCc -3' miRNA: 3'- aCGUCCG----CGGUUCUC--UGaaGCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 74382 | 0.75 | 0.340483 |
Target: 5'- gGUagAGGCGCUggGGGACcgcgcggccgccgCGCGCGCg -3' miRNA: 3'- aCG--UCCGCGGuuCUCUGaa-----------GCGCGCG- -5' |
|||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 79989 | 0.75 | 0.352926 |
Target: 5'- cGCGucuGGcCGCUggGGGGCUcuacgCGCGCGCg -3' miRNA: 3'- aCGU---CC-GCGGuuCUCUGAa----GCGCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home