miRNA display CGI


Results 21 - 40 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 40158 0.75 0.352139
Target:  5'- cGCAGcuGCGCCAaagccgcGGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUC--CGCGGU-------UCUCUGAaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 63164 0.76 0.315109
Target:  5'- cGCAGGCGCgCAcgucGGucGCggUCGCGCGCc -3'
miRNA:   3'- aCGUCCGCG-GU----UCucUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 31299 0.78 0.219741
Target:  5'- gGCGGGCGCgGGGAGcggGCUcugcugcguguuuUCGCGCGUg -3'
miRNA:   3'- aCGUCCGCGgUUCUC---UGA-------------AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 78122 0.8 0.171489
Target:  5'- cGCGGGCGCCAAaAG-CgggCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUcUCuGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101082 0.73 0.419826
Target:  5'- cGCGGGgGCCGGGucggcgGGGCgggCGgGCGCg -3'
miRNA:   3'- aCGUCCgCGGUUC------UCUGaa-GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 106786 0.74 0.368927
Target:  5'- cGCgaGGGCGCCGGGGGcCcggGCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGUUCUCuGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 82345 0.76 0.315109
Target:  5'- gUGCGcGGCGCCAGGGcGcACUgcacaugagCGCGCGCc -3'
miRNA:   3'- -ACGU-CCGCGGUUCU-C-UGAa--------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 49729 0.81 0.136073
Target:  5'- aGUGGGCGCCGGcGAGGCggUGCGCGUg -3'
miRNA:   3'- aCGUCCGCGGUU-CUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 36013 0.75 0.352926
Target:  5'- cGCGGGCGUgGugcuGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUCCGCGgUu---CUCUGAaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 51524 0.82 0.122275
Target:  5'- gGCGGGCaacGCCAacaugucGGAGGCUgcgCGCGCGCg -3'
miRNA:   3'- aCGUCCG---CGGU-------UCUCUGAa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 24515 0.76 0.315109
Target:  5'- cGUGGGCGUC--GGGGC-UCGCGCGCu -3'
miRNA:   3'- aCGUCCGCGGuuCUCUGaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33562 0.75 0.352926
Target:  5'- gGCAGaCGCCGcGGAGGCggcCGUGCGCg -3'
miRNA:   3'- aCGUCcGCGGU-UCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 32841 0.76 0.293928
Target:  5'- cGCGuGGcCGCCGAGAccgcGGCgcUCGCGCGCg -3'
miRNA:   3'- aCGU-CC-GCGGUUCU----CUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 131135 0.77 0.241147
Target:  5'- gGCGGGCGCCGGGcccggcgccccgcgGGGC--CGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUC--------------UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 51266 0.79 0.194552
Target:  5'- cUGCGGGCaGCCGGuGGACgggcgcaacuUUCGCGCGCa -3'
miRNA:   3'- -ACGUCCG-CGGUUcUCUG----------AAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 64874 0.79 0.185017
Target:  5'- cGCAGGCgcgcGCCGAGAGcaACgcCGCGCGCc -3'
miRNA:   3'- aCGUCCG----CGGUUCUC--UGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 51061 0.73 0.428715
Target:  5'- aGCAGGC-CaccGAGGCgUUCGUGCGCg -3'
miRNA:   3'- aCGUCCGcGguuCUCUG-AAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 55685 0.73 0.419826
Target:  5'- cGCAGGCgGCCGGG-GAaaacucgcgcuuCUUCGUGUGCc -3'
miRNA:   3'- aCGUCCG-CGGUUCuCU------------GAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 36988 0.74 0.393844
Target:  5'- aGCGGGCccgcGCCGAGcGGCggCGgCGCGCu -3'
miRNA:   3'- aCGUCCG----CGGUUCuCUGaaGC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101559 0.74 0.376288
Target:  5'- cGCAGGcCGCCGAGcccgggccgcgccAGACgcccccCGCGUGCg -3'
miRNA:   3'- aCGUCC-GCGGUUC-------------UCUGaa----GCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.