miRNA display CGI


Results 21 - 40 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 3974 0.76 0.315109
Target:  5'- gGCgaGGGCGCCGGGGGcCgg-GCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGUUCUCuGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 4208 0.7 0.593683
Target:  5'- cGCAGGCaGCCAaagcccugcgcGGuGcCggCGCGCGCc -3'
miRNA:   3'- aCGUCCG-CGGU-----------UCuCuGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 4296 0.71 0.533039
Target:  5'- cGCcGGCGCCuuGGuAC-UCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGGuuCUcUGaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 4628 0.71 0.553051
Target:  5'- cGCGGGCgGCCcgccGGCgcUCGCGCGCc -3'
miRNA:   3'- aCGUCCG-CGGuucuCUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 5071 0.66 0.836672
Target:  5'- gGCGcGGC-CCAGGAcGGCgaCGCGuCGCc -3'
miRNA:   3'- aCGU-CCGcGGUUCU-CUGaaGCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 5622 0.71 0.553051
Target:  5'- cGUGGGCGCCGcGGucCcgCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUuCUcuGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 5730 0.72 0.493849
Target:  5'- gGCGGGCGUCGcaucaGGGGACgcaccgccgUCcgGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGU-----UCUCUGa--------AG--CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 5934 0.66 0.805721
Target:  5'- aGCGGuCGCCGcGAGcaagcgcgcguacguACgcgCGCGCGCg -3'
miRNA:   3'- aCGUCcGCGGUuCUC---------------UGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 6338 0.67 0.765142
Target:  5'- cGCGGGUGCCccGGcGGCaacCGCGcCGCg -3'
miRNA:   3'- aCGUCCGCGGu-UCuCUGaa-GCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 6893 0.72 0.493849
Target:  5'- aGCAGuGCGUCGGcGAG-CgcgCGCGCGCc -3'
miRNA:   3'- aCGUC-CGCGGUU-CUCuGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 7258 0.67 0.765142
Target:  5'- gUGCGGGCGCgGcGGGGGCa-CGCGagaCGCu -3'
miRNA:   3'- -ACGUCCGCGgU-UCUCUGaaGCGC---GCG- -5'
6357 5' -57.2 NC_001847.1 + 7373 0.72 0.474752
Target:  5'- cUGCcGGCGCCGcugacaguGGAGGacgUgGCGCGCu -3'
miRNA:   3'- -ACGuCCGCGGU--------UCUCUga-AgCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 7738 0.66 0.836672
Target:  5'- cGCGGGCGC--GGAGGCggCGgccaGgGCa -3'
miRNA:   3'- aCGUCCGCGguUCUCUGaaGCg---CgCG- -5'
6357 5' -57.2 NC_001847.1 + 7860 0.67 0.78392
Target:  5'- cGguGGCGCCugcAGAGGCg--GC-CGCc -3'
miRNA:   3'- aCguCCGCGGu--UCUCUGaagCGcGCG- -5'
6357 5' -57.2 NC_001847.1 + 8119 0.72 0.513291
Target:  5'- cGCAGGCGCgGGGccccaggggcGGGCggUGCuGCGCg -3'
miRNA:   3'- aCGUCCGCGgUUC----------UCUGaaGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 8447 0.69 0.674786
Target:  5'- gGC-GGCGCCGggucGGAGGCggCGCcgggccgggggcgGCGCu -3'
miRNA:   3'- aCGuCCGCGGU----UCUCUGaaGCG-------------CGCG- -5'
6357 5' -57.2 NC_001847.1 + 8653 0.7 0.624477
Target:  5'- -uCGGGCGCCcAGAcGAUg--GCGCGCa -3'
miRNA:   3'- acGUCCGCGGuUCU-CUGaagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 9746 0.68 0.745885
Target:  5'- gGCAGuCGCCGucGGuccaccucGACcUCGCGCGCc -3'
miRNA:   3'- aCGUCcGCGGU--UCu-------CUGaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 10134 0.69 0.645048
Target:  5'- aGCGGGCccgGCCGuagcgcgagcgGGAgGGCUUuuucgaCGCGCGCg -3'
miRNA:   3'- aCGUCCG---CGGU-----------UCU-CUGAA------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 10268 0.67 0.778341
Target:  5'- aGCGGGCGCauaaaaaccgcGGGC--CGCGCGCu -3'
miRNA:   3'- aCGUCCGCGguuc-------UCUGaaGCGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.