Results 21 - 40 of 640 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 3974 | 0.76 | 0.315109 |
Target: 5'- gGCgaGGGCGCCGGGGGcCgg-GCGCGCg -3' miRNA: 3'- aCG--UCCGCGGUUCUCuGaagCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 4208 | 0.7 | 0.593683 |
Target: 5'- cGCAGGCaGCCAaagcccugcgcGGuGcCggCGCGCGCc -3' miRNA: 3'- aCGUCCG-CGGU-----------UCuCuGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 4296 | 0.71 | 0.533039 |
Target: 5'- cGCcGGCGCCuuGGuAC-UCGCGCGCc -3' miRNA: 3'- aCGuCCGCGGuuCUcUGaAGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 4628 | 0.71 | 0.553051 |
Target: 5'- cGCGGGCgGCCcgccGGCgcUCGCGCGCc -3' miRNA: 3'- aCGUCCG-CGGuucuCUGa-AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 5071 | 0.66 | 0.836672 |
Target: 5'- gGCGcGGC-CCAGGAcGGCgaCGCGuCGCc -3' miRNA: 3'- aCGU-CCGcGGUUCU-CUGaaGCGC-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 5622 | 0.71 | 0.553051 |
Target: 5'- cGUGGGCGCCGcGGucCcgCGCGCGCc -3' miRNA: 3'- aCGUCCGCGGUuCUcuGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 5730 | 0.72 | 0.493849 |
Target: 5'- gGCGGGCGUCGcaucaGGGGACgcaccgccgUCcgGCGCGCc -3' miRNA: 3'- aCGUCCGCGGU-----UCUCUGa--------AG--CGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 5934 | 0.66 | 0.805721 |
Target: 5'- aGCGGuCGCCGcGAGcaagcgcgcguacguACgcgCGCGCGCg -3' miRNA: 3'- aCGUCcGCGGUuCUC---------------UGaa-GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 6338 | 0.67 | 0.765142 |
Target: 5'- cGCGGGUGCCccGGcGGCaacCGCGcCGCg -3' miRNA: 3'- aCGUCCGCGGu-UCuCUGaa-GCGC-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 6893 | 0.72 | 0.493849 |
Target: 5'- aGCAGuGCGUCGGcGAG-CgcgCGCGCGCc -3' miRNA: 3'- aCGUC-CGCGGUU-CUCuGaa-GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 7258 | 0.67 | 0.765142 |
Target: 5'- gUGCGGGCGCgGcGGGGGCa-CGCGagaCGCu -3' miRNA: 3'- -ACGUCCGCGgU-UCUCUGaaGCGC---GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 7373 | 0.72 | 0.474752 |
Target: 5'- cUGCcGGCGCCGcugacaguGGAGGacgUgGCGCGCu -3' miRNA: 3'- -ACGuCCGCGGU--------UCUCUga-AgCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 7738 | 0.66 | 0.836672 |
Target: 5'- cGCGGGCGC--GGAGGCggCGgccaGgGCa -3' miRNA: 3'- aCGUCCGCGguUCUCUGaaGCg---CgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 7860 | 0.67 | 0.78392 |
Target: 5'- cGguGGCGCCugcAGAGGCg--GC-CGCc -3' miRNA: 3'- aCguCCGCGGu--UCUCUGaagCGcGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 8119 | 0.72 | 0.513291 |
Target: 5'- cGCAGGCGCgGGGccccaggggcGGGCggUGCuGCGCg -3' miRNA: 3'- aCGUCCGCGgUUC----------UCUGaaGCG-CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 8447 | 0.69 | 0.674786 |
Target: 5'- gGC-GGCGCCGggucGGAGGCggCGCcgggccgggggcgGCGCu -3' miRNA: 3'- aCGuCCGCGGU----UCUCUGaaGCG-------------CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 8653 | 0.7 | 0.624477 |
Target: 5'- -uCGGGCGCCcAGAcGAUg--GCGCGCa -3' miRNA: 3'- acGUCCGCGGuUCU-CUGaagCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 9746 | 0.68 | 0.745885 |
Target: 5'- gGCAGuCGCCGucGGuccaccucGACcUCGCGCGCc -3' miRNA: 3'- aCGUCcGCGGU--UCu-------CUGaAGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 10134 | 0.69 | 0.645048 |
Target: 5'- aGCGGGCccgGCCGuagcgcgagcgGGAgGGCUUuuucgaCGCGCGCg -3' miRNA: 3'- aCGUCCG---CGGU-----------UCU-CUGAA------GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 10268 | 0.67 | 0.778341 |
Target: 5'- aGCGGGCGCauaaaaaccgcGGGC--CGCGCGCu -3' miRNA: 3'- aCGUCCGCGguuc-------UCUGaaGCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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