miRNA display CGI


Results 1 - 20 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 297 0.79 0.196509
Target:  5'- cGCGGGCGCCGuccccgcgccccgccGGAG-CUUCGCGCu- -3'
miRNA:   3'- aCGUCCGCGGU---------------UCUCuGAAGCGCGcg -5'
6357 5' -57.2 NC_001847.1 + 483 0.7 0.593683
Target:  5'- aGCAgcGGCGgCGGcGGGGCggcCGCGCGCc -3'
miRNA:   3'- aCGU--CCGCgGUU-CUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 945 0.66 0.836672
Target:  5'- aGCccGCGCCcGGGGACgacUGCGCcgGCa -3'
miRNA:   3'- aCGucCGCGGuUCUCUGaa-GCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 1208 0.69 0.645048
Target:  5'- cGuCGGGCGCCA----GCUccagCGCGCGCc -3'
miRNA:   3'- aC-GUCCGCGGUucucUGAa---GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 1492 0.66 0.819754
Target:  5'- aGCGgcGGCGCCucGGGGuagagcCGCGCGUa -3'
miRNA:   3'- aCGU--CCGCGGu-UCUCugaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 1920 0.71 0.553051
Target:  5'- gGCAGGUGgC--GAGGCUUagccgGCGCGCg -3'
miRNA:   3'- aCGUCCGCgGuuCUCUGAAg----CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 2032 0.7 0.600853
Target:  5'- aGCAcGGCGCCGgccguggccacgauAGGGuCUUUGgUGCGCa -3'
miRNA:   3'- aCGU-CCGCGGU--------------UCUCuGAAGC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 2352 0.66 0.819754
Target:  5'- uUGCAcGG-GCCGcauGAGGuCcagUCGCGCGCc -3'
miRNA:   3'- -ACGU-CCgCGGUu--CUCU-Ga--AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 2825 0.68 0.716269
Target:  5'- cGCcGGCaccuccGCCGGcGGGCUgaacagCGCGCGCg -3'
miRNA:   3'- aCGuCCG------CGGUUcUCUGAa-----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 2976 0.7 0.593683
Target:  5'- cGCAGcGcCGCCGGGGccGGCgcuggagcCGCGCGCg -3'
miRNA:   3'- aCGUC-C-GCGGUUCU--CUGaa------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3010 0.69 0.645048
Target:  5'- gGCAGcaGCGCCGcccaauAGGGGCggucacgUCuGCGCGCc -3'
miRNA:   3'- aCGUC--CGCGGU------UCUCUGa------AG-CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3253 0.67 0.774595
Target:  5'- cGCcGGCGgCAGGGGcGCcggCGCcGCGCg -3'
miRNA:   3'- aCGuCCGCgGUUCUC-UGaa-GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 3348 0.69 0.665579
Target:  5'- -cCGGGUagGCCAuGGGGGCguaCGCGCGCc -3'
miRNA:   3'- acGUCCG--CGGU-UCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3479 0.67 0.774595
Target:  5'- cGcCGGcGCGCCGAGAG-C-UCGCacaugagccGCGCg -3'
miRNA:   3'- aC-GUC-CGCGGUUCUCuGaAGCG---------CGCG- -5'
6357 5' -57.2 NC_001847.1 + 3583 0.69 0.675807
Target:  5'- cUGCAGGUccggGCCcgcGAG-CUUCGCGCucuGCa -3'
miRNA:   3'- -ACGUCCG----CGGuu-CUCuGAAGCGCG---CG- -5'
6357 5' -57.2 NC_001847.1 + 3677 0.73 0.41105
Target:  5'- aGCAGGcCGCCGcGAGcCU--GCGCGCa -3'
miRNA:   3'- aCGUCC-GCGGUuCUCuGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3708 0.66 0.819754
Target:  5'- gGUAGGCGC-----GGCaaUCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGguucuCUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3803 0.66 0.811033
Target:  5'- cGCAcGCgGCCGGGcGGCggCGgCGCGCu -3'
miRNA:   3'- aCGUcCG-CGGUUCuCUGaaGC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3915 0.71 0.563143
Target:  5'- cGCGGGCGCCGG------UUGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUcucugaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 3942 0.66 0.811033
Target:  5'- aGCGGGCGgCGAGcgcGACccacagCGCcaGCGCg -3'
miRNA:   3'- aCGUCCGCgGUUCu--CUGaa----GCG--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.