Results 1 - 20 of 640 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 297 | 0.79 | 0.196509 |
Target: 5'- cGCGGGCGCCGuccccgcgccccgccGGAG-CUUCGCGCu- -3' miRNA: 3'- aCGUCCGCGGU---------------UCUCuGAAGCGCGcg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 483 | 0.7 | 0.593683 |
Target: 5'- aGCAgcGGCGgCGGcGGGGCggcCGCGCGCc -3' miRNA: 3'- aCGU--CCGCgGUU-CUCUGaa-GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 945 | 0.66 | 0.836672 |
Target: 5'- aGCccGCGCCcGGGGACgacUGCGCcgGCa -3' miRNA: 3'- aCGucCGCGGuUCUCUGaa-GCGCG--CG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 1208 | 0.69 | 0.645048 |
Target: 5'- cGuCGGGCGCCA----GCUccagCGCGCGCc -3' miRNA: 3'- aC-GUCCGCGGUucucUGAa---GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 1492 | 0.66 | 0.819754 |
Target: 5'- aGCGgcGGCGCCucGGGGuagagcCGCGCGUa -3' miRNA: 3'- aCGU--CCGCGGu-UCUCugaa--GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 1920 | 0.71 | 0.553051 |
Target: 5'- gGCAGGUGgC--GAGGCUUagccgGCGCGCg -3' miRNA: 3'- aCGUCCGCgGuuCUCUGAAg----CGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 2032 | 0.7 | 0.600853 |
Target: 5'- aGCAcGGCGCCGgccguggccacgauAGGGuCUUUGgUGCGCa -3' miRNA: 3'- aCGU-CCGCGGU--------------UCUCuGAAGC-GCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 2352 | 0.66 | 0.819754 |
Target: 5'- uUGCAcGG-GCCGcauGAGGuCcagUCGCGCGCc -3' miRNA: 3'- -ACGU-CCgCGGUu--CUCU-Ga--AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 2825 | 0.68 | 0.716269 |
Target: 5'- cGCcGGCaccuccGCCGGcGGGCUgaacagCGCGCGCg -3' miRNA: 3'- aCGuCCG------CGGUUcUCUGAa-----GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 2976 | 0.7 | 0.593683 |
Target: 5'- cGCAGcGcCGCCGGGGccGGCgcuggagcCGCGCGCg -3' miRNA: 3'- aCGUC-C-GCGGUUCU--CUGaa------GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3010 | 0.69 | 0.645048 |
Target: 5'- gGCAGcaGCGCCGcccaauAGGGGCggucacgUCuGCGCGCc -3' miRNA: 3'- aCGUC--CGCGGU------UCUCUGa------AG-CGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3253 | 0.67 | 0.774595 |
Target: 5'- cGCcGGCGgCAGGGGcGCcggCGCcGCGCg -3' miRNA: 3'- aCGuCCGCgGUUCUC-UGaa-GCG-CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3348 | 0.69 | 0.665579 |
Target: 5'- -cCGGGUagGCCAuGGGGGCguaCGCGCGCc -3' miRNA: 3'- acGUCCG--CGGU-UCUCUGaa-GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3479 | 0.67 | 0.774595 |
Target: 5'- cGcCGGcGCGCCGAGAG-C-UCGCacaugagccGCGCg -3' miRNA: 3'- aC-GUC-CGCGGUUCUCuGaAGCG---------CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3583 | 0.69 | 0.675807 |
Target: 5'- cUGCAGGUccggGCCcgcGAG-CUUCGCGCucuGCa -3' miRNA: 3'- -ACGUCCG----CGGuu-CUCuGAAGCGCG---CG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3677 | 0.73 | 0.41105 |
Target: 5'- aGCAGGcCGCCGcGAGcCU--GCGCGCa -3' miRNA: 3'- aCGUCC-GCGGUuCUCuGAagCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3708 | 0.66 | 0.819754 |
Target: 5'- gGUAGGCGC-----GGCaaUCGCGCGCg -3' miRNA: 3'- aCGUCCGCGguucuCUGa-AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3803 | 0.66 | 0.811033 |
Target: 5'- cGCAcGCgGCCGGGcGGCggCGgCGCGCu -3' miRNA: 3'- aCGUcCG-CGGUUCuCUGaaGC-GCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3915 | 0.71 | 0.563143 |
Target: 5'- cGCGGGCGCCGG------UUGCGCGCc -3' miRNA: 3'- aCGUCCGCGGUUcucugaAGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3942 | 0.66 | 0.811033 |
Target: 5'- aGCGGGCGgCGAGcgcGACccacagCGCcaGCGCg -3' miRNA: 3'- aCGUCCGCgGUUCu--CUGaa----GCG--CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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