miRNA display CGI


Results 1 - 20 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 134942 0.66 0.802148
Target:  5'- -cCGGGCGCCGGG-GGCgggggCGgGgGCg -3'
miRNA:   3'- acGUCCGCGGUUCuCUGaa---GCgCgCG- -5'
6357 5' -57.2 NC_001847.1 + 134845 0.7 0.624477
Target:  5'- gGCgGGGCGCgGGGAcGGCgccCGCGCGg -3'
miRNA:   3'- aCG-UCCGCGgUUCU-CUGaa-GCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 134656 0.69 0.675807
Target:  5'- aGCAGGCGC--GGAGGC---GCGgGCa -3'
miRNA:   3'- aCGUCCGCGguUCUCUGaagCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 134516 0.69 0.634764
Target:  5'- cGgGGGCGggGGGAGGCgcgggcCGCGCGCc -3'
miRNA:   3'- aCgUCCGCggUUCUCUGaa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 134188 0.69 0.665579
Target:  5'- cGCccGGCGCagcguGGAG-CggCGCGCGCg -3'
miRNA:   3'- aCGu-CCGCGgu---UCUCuGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 134121 0.66 0.824905
Target:  5'- cUGCGGcGCGCCGcgGGcGGCggccugguggagCGCGUGCc -3'
miRNA:   3'- -ACGUC-CGCGGU--UCuCUGaa----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 134012 0.66 0.836672
Target:  5'- cGCcgAGGCGCCGccgcuggugcuGGAGGCcgCGgCgGCGCc -3'
miRNA:   3'- aCG--UCCGCGGU-----------UCUCUGaaGC-G-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 133972 0.75 0.329859
Target:  5'- aGauaAGGCGCC--GGGGCUgggagCGCGCGCg -3'
miRNA:   3'- aCg--UCCGCGGuuCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133859 0.67 0.78392
Target:  5'- gGCGGccagccaccGCGCCGccaaccgcuGGGGGCUcgGCGCGCc -3'
miRNA:   3'- aCGUC---------CGCGGU---------UCUCUGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133815 0.66 0.836672
Target:  5'- gGCGcGGCGCUggGgcucggggagccGGACUUCGUggaGgGCg -3'
miRNA:   3'- aCGU-CCGCGGuuC------------UCUGAAGCG---CgCG- -5'
6357 5' -57.2 NC_001847.1 + 133730 0.68 0.736101
Target:  5'- gGCGGGCGC---GGGGC--CGCGUGCc -3'
miRNA:   3'- aCGUCCGCGguuCUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133598 0.71 0.543015
Target:  5'- cGCGGcGCGucuucggcCCGGGcGcCUUCGCGCGCg -3'
miRNA:   3'- aCGUC-CGC--------GGUUCuCuGAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133589 0.72 0.493849
Target:  5'- cGCGGGCGCgcuaucgggCGGGcGGGCUUgggcggcacaagCGCGCGCg -3'
miRNA:   3'- aCGUCCGCG---------GUUC-UCUGAA------------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133543 0.7 0.624477
Target:  5'- cGCAGuGCGCCGcgcgcuggcccgAGcGGCgcgcuggCGCGCGCc -3'
miRNA:   3'- aCGUC-CGCGGU------------UCuCUGaa-----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133393 0.67 0.793107
Target:  5'- cGC-GGCGCgguGGAGuACcUCuGCGCGCg -3'
miRNA:   3'- aCGuCCGCGgu-UCUC-UGaAG-CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133182 0.7 0.618307
Target:  5'- cGCGGGCGCgGgcugcccucgcuggaGGAGcucuGCgcCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGgU---------------UCUC----UGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 133062 0.66 0.802148
Target:  5'- cGCGGGCcCCGcGGGGCgcUCGC-CGCc -3'
miRNA:   3'- aCGUCCGcGGUuCUCUGa-AGCGcGCG- -5'
6357 5' -57.2 NC_001847.1 + 132982 0.77 0.261123
Target:  5'- cGCGGGCGCUgcGAGACcuggUGCuGCGCa -3'
miRNA:   3'- aCGUCCGCGGuuCUCUGaa--GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 132833 0.66 0.848071
Target:  5'- aGCGGGCgugucgccaugggcaGCCGucuuGGACUUUG-GCGCg -3'
miRNA:   3'- aCGUCCG---------------CGGUuc--UCUGAAGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 132199 0.67 0.774595
Target:  5'- gGCGGcCGCCGcgcuGGAGGCggC-CGCGCu -3'
miRNA:   3'- aCGUCcGCGGU----UCUCUGaaGcGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.