miRNA display CGI


Results 21 - 40 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 131978 0.69 0.655323
Target:  5'- cGCgAGGCGCU-GGAGGCggccCGCcGCGCc -3'
miRNA:   3'- aCG-UCCGCGGuUCUCUGaa--GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 131925 0.66 0.811033
Target:  5'- cGCGgcGGCGC--GGAGGCa-CGUGCGCc -3'
miRNA:   3'- aCGU--CCGCGguUCUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 131821 0.66 0.844853
Target:  5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 131418 0.68 0.736101
Target:  5'- cGCGuGcGCGCCGu--GGCcggCGCGCGCg -3'
miRNA:   3'- aCGU-C-CGCGGUucuCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 131334 0.66 0.828303
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 131229 0.67 0.765142
Target:  5'- cGCGGGCGCgCAAccGGCgccCGCGCugGCu -3'
miRNA:   3'- aCGUCCGCG-GUUcuCUGaa-GCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 131135 0.77 0.241147
Target:  5'- gGCGGGCGCCGGGcccggcgccccgcgGGGC--CGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUC--------------UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 130989 0.67 0.755568
Target:  5'- aGCGGGC-CCGAG-GACUgcaGCGaUGCc -3'
miRNA:   3'- aCGUCCGcGGUUCuCUGAag-CGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 130839 0.72 0.474752
Target:  5'- cGCAGGCGgcgcgcgaguaCCAAGGcGCcggCGCGCGCc -3'
miRNA:   3'- aCGUCCGC-----------GGUUCUcUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 130748 0.7 0.624477
Target:  5'- cGCGGacaGCGCCu-GGGccGCggCGCGCGCg -3'
miRNA:   3'- aCGUC---CGCGGuuCUC--UGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 130683 0.72 0.513291
Target:  5'- gGgGGGCGCCGAGgacgcGGACgUCGCggaguGCGCc -3'
miRNA:   3'- aCgUCCGCGGUUC-----UCUGaAGCG-----CGCG- -5'
6357 5' -57.2 NC_001847.1 + 130613 0.79 0.209658
Target:  5'- cGCGGGCggccGCCGcGAGGCacgUCGUGCGCa -3'
miRNA:   3'- aCGUCCG----CGGUuCUCUGa--AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 130494 0.66 0.811033
Target:  5'- cGCGGcGCGUC---GGGCUgagGCGCGCg -3'
miRNA:   3'- aCGUC-CGCGGuucUCUGAag-CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 130320 0.67 0.755568
Target:  5'- gGCGGccccaCGCuCAAG-GGCaUCGCGCGCc -3'
miRNA:   3'- aCGUCc----GCG-GUUCuCUGaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 130184 0.78 0.214383
Target:  5'- cGCGGGCGCCcggccugAAGAGACgggCG-GCGCg -3'
miRNA:   3'- aCGUCCGCGG-------UUCUCUGaa-GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 130106 0.69 0.663529
Target:  5'- cGCGGGCugggacgaguaCGAGAGcGCccUCGCGCGCg -3'
miRNA:   3'- aCGUCCGcg---------GUUCUC-UGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 129355 0.68 0.706239
Target:  5'- aGCGcGGUGCCGGGcccgGGGCUagaCGCcGCGCu -3'
miRNA:   3'- aCGU-CCGCGGUUC----UCUGAa--GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 129174 0.68 0.736101
Target:  5'- cGCAacaGCC--GAGGCUUaCGCGCGCg -3'
miRNA:   3'- aCGUccgCGGuuCUCUGAA-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 128787 0.7 0.583465
Target:  5'- cGCGGGCGgucagaCCAGGgcGGGCgggCGgGCGCg -3'
miRNA:   3'- aCGUCCGC------GGUUC--UCUGaa-GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 127572 0.68 0.736101
Target:  5'- aGCaAGGCgGCCAGGcAGGugUCGCGCauGCg -3'
miRNA:   3'- aCG-UCCG-CGGUUC-UCUgaAGCGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.