miRNA display CGI


Results 21 - 40 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 64254 0.66 0.84566
Target:  5'- gGCGGGCcCUAGGGGACUauaaagcugccccugCGCuCGCu -3'
miRNA:   3'- aCGUCCGcGGUUCUCUGAa--------------GCGcGCG- -5'
6357 5' -57.2 NC_001847.1 + 76705 0.66 0.836672
Target:  5'- cGCGGgaggaggcGCGCCGGGAagGACggUCGgGCGg -3'
miRNA:   3'- aCGUC--------CGCGGUUCU--CUGa-AGCgCGCg -5'
6357 5' -57.2 NC_001847.1 + 94363 0.66 0.844853
Target:  5'- cGCuGGCGC--GGcGGCgucugcCGCGCGCa -3'
miRNA:   3'- aCGuCCGCGguUCuCUGaa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 59345 0.66 0.844853
Target:  5'- gGC-GGCGgCGAGG----UCGCGCGCc -3'
miRNA:   3'- aCGuCCGCgGUUCUcugaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 29008 0.66 0.844853
Target:  5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 119542 0.66 0.844853
Target:  5'- gGCAGGCugGgCAAGGGGCg-CGCG-GCc -3'
miRNA:   3'- aCGUCCG--CgGUUCUCUGaaGCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 69493 0.66 0.844853
Target:  5'- gUGCGGGCGCgCAcGcGGCcgUUgGCgGCGCa -3'
miRNA:   3'- -ACGUCCGCG-GUuCuCUG--AAgCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 126272 0.66 0.836672
Target:  5'- cGCuGGCGCUcuGGGGCccaaUUGCGCcaGCa -3'
miRNA:   3'- aCGuCCGCGGuuCUCUGa---AGCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 115918 0.66 0.836672
Target:  5'- cGCAGGCGCU----GGCUgUCGCaGCGg -3'
miRNA:   3'- aCGUCCGCGGuucuCUGA-AGCG-CGCg -5'
6357 5' -57.2 NC_001847.1 + 124458 0.66 0.836672
Target:  5'- gGCGGuGCGggAAGcGGCUgguUCGCGUGCg -3'
miRNA:   3'- aCGUC-CGCggUUCuCUGA---AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101927 0.66 0.836672
Target:  5'- gGCGcGGCGCCAAgccGAGccacccgcgccGCcaagUCGgGCGCa -3'
miRNA:   3'- aCGU-CCGCGGUU---CUC-----------UGa---AGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 132833 0.66 0.848071
Target:  5'- aGCGGGCgugucgccaugggcaGCCGucuuGGACUUUG-GCGCg -3'
miRNA:   3'- aCGUCCG---------------CGGUuc--UCUGAAGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 31199 0.66 0.836672
Target:  5'- cGCcgAGGCGCCGccgcuggugcuGGAGGCcgCGgCgGCGCc -3'
miRNA:   3'- aCG--UCCGCGGU-----------UCUCUGaaGC-G-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 31002 0.66 0.836672
Target:  5'- gGCGcGGCGCUggGgcucggggagccGGACUUCGUggaGgGCg -3'
miRNA:   3'- aCGU-CCGCGGuuC------------UCUGAAGCG---CgCG- -5'
6357 5' -57.2 NC_001847.1 + 108020 0.66 0.836672
Target:  5'- gGCAGuuucgcgaCGUCgAAGAGGCUUgGCGCGa -3'
miRNA:   3'- aCGUCc-------GCGG-UUCUCUGAAgCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 38431 0.66 0.836672
Target:  5'- gGCGGGaGcCCGAGGGGCgggcaUCGCaGuCGCg -3'
miRNA:   3'- aCGUCCgC-GGUUCUCUGa----AGCG-C-GCG- -5'
6357 5' -57.2 NC_001847.1 + 33909 0.66 0.836672
Target:  5'- gGcCAGGCuGCUcgGGGAGGCUggccucccCGUGUGCa -3'
miRNA:   3'- aC-GUCCG-CGG--UUCUCUGAa-------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 945 0.66 0.836672
Target:  5'- aGCccGCGCCcGGGGACgacUGCGCcgGCa -3'
miRNA:   3'- aCGucCGCGGuUCUCUGaa-GCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 47965 0.66 0.835843
Target:  5'- aGCAGcGCGUgGAggauguuGAGGCUgUCGCucGCGCu -3'
miRNA:   3'- aCGUC-CGCGgUU-------CUCUGA-AGCG--CGCG- -5'
6357 5' -57.2 NC_001847.1 + 97578 0.66 0.835843
Target:  5'- aGCGGccaGCGCCGccgcgucuuccgaAGGGcCgcccgUCGCGUGCa -3'
miRNA:   3'- aCGUC---CGCGGU-------------UCUCuGa----AGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.