miRNA display CGI


Results 41 - 60 of 640 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 69493 0.66 0.844853
Target:  5'- gUGCGGGCGCgCAcGcGGCcgUUgGCgGCGCa -3'
miRNA:   3'- -ACGUCCGCG-GUuCuCUG--AAgCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 119542 0.66 0.844853
Target:  5'- gGCAGGCugGgCAAGGGGCg-CGCG-GCc -3'
miRNA:   3'- aCGUCCG--CgGUUCUCUGaaGCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 29008 0.66 0.844853
Target:  5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3'
miRNA:   3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 59345 0.66 0.844853
Target:  5'- gGC-GGCGgCGAGG----UCGCGCGCc -3'
miRNA:   3'- aCGuCCGCgGUUCUcugaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 94363 0.66 0.844853
Target:  5'- cGCuGGCGC--GGcGGCgucugcCGCGCGCa -3'
miRNA:   3'- aCGuCCGCGguUCuCUGaa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 38431 0.66 0.836672
Target:  5'- gGCGGGaGcCCGAGGGGCgggcaUCGCaGuCGCg -3'
miRNA:   3'- aCGUCCgC-GGUUCUCUGa----AGCG-C-GCG- -5'
6357 5' -57.2 NC_001847.1 + 33909 0.66 0.836672
Target:  5'- gGcCAGGCuGCUcgGGGAGGCUggccucccCGUGUGCa -3'
miRNA:   3'- aC-GUCCG-CGG--UUCUCUGAa-------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 31308 0.66 0.824905
Target:  5'- cUGCGGcGCGCCGcgGGcGGCggccugguggagCGCGUGCc -3'
miRNA:   3'- -ACGUC-CGCGGU--UCuCUGaa----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33656 0.66 0.828303
Target:  5'- aGCcGGCGCCucGGucGCUa-GCGCGCc -3'
miRNA:   3'- aCGuCCGCGGu-UCucUGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 52399 0.66 0.828303
Target:  5'- gGCAaGCGCUccAGcgcGGGCggCGCGCGCu -3'
miRNA:   3'- aCGUcCGCGGu-UC---UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 68741 0.66 0.828303
Target:  5'- aGCccGCGCCGc-GGAUgugCGCGCGUg -3'
miRNA:   3'- aCGucCGCGGUucUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 69896 0.66 0.828303
Target:  5'- cGCGGGC-CCGGGuGGCggaaaaGCGcCGCc -3'
miRNA:   3'- aCGUCCGcGGUUCuCUGaag---CGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 81858 0.66 0.828303
Target:  5'- aGC-GGCGU---GAGGCggaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGguuCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 28521 0.66 0.828303
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 64825 0.66 0.828303
Target:  5'- cGCaccGGGCGCUucagcuccGAGACcagCGCgGCGCg -3'
miRNA:   3'- aCG---UCCGCGGuu------CUCUGaa-GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 117893 0.66 0.828303
Target:  5'- cGCAacGGCuacCCcguGGAGGCUcggcaCGCGCGCg -3'
miRNA:   3'- aCGU--CCGc--GGu--UCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 58206 0.66 0.834181
Target:  5'- aGCAGGCGCUccGGGcggaucugcccgccGGGCggcagcggCGgCGCGCg -3'
miRNA:   3'- aCGUCCGCGG--UUC--------------UCUGaa------GC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 97578 0.66 0.835843
Target:  5'- aGCGGccaGCGCCGccgcgucuuccgaAGGGcCgcccgUCGCGUGCa -3'
miRNA:   3'- aCGUC---CGCGGU-------------UCUCuGa----AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 47965 0.66 0.835843
Target:  5'- aGCAGcGCGUgGAggauguuGAGGCUgUCGCucGCGCu -3'
miRNA:   3'- aCGUC-CGCGgUU-------CUCUGA-AGCG--CGCG- -5'
6357 5' -57.2 NC_001847.1 + 945 0.66 0.836672
Target:  5'- aGCccGCGCCcGGGGACgacUGCGCcgGCa -3'
miRNA:   3'- aCGucCGCGGuUCUCUGaa-GCGCG--CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.