miRNA display CGI


Results 41 - 60 of 640 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 40158 0.75 0.352139
Target:  5'- cGCAGcuGCGCCAaagccgcGGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUC--CGCGGU-------UCUCUGAaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 79989 0.75 0.352926
Target:  5'- cGCGucuGGcCGCUggGGGGCUcuacgCGCGCGCg -3'
miRNA:   3'- aCGU---CC-GCGGuuCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 36013 0.75 0.352926
Target:  5'- cGCGGGCGUgGugcuGGGGCUgCGCGCGg -3'
miRNA:   3'- aCGUCCGCGgUu---CUCUGAaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 133972 0.75 0.329859
Target:  5'- aGauaAGGCGCC--GGGGCUgggagCGCGCGCg -3'
miRNA:   3'- aCg--UCCGCGGuuCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 114152 0.75 0.329859
Target:  5'- cGCGcGGUGCCGauugGGAGGCcuagUGCGCGCg -3'
miRNA:   3'- aCGU-CCGCGGU----UCUCUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 96522 0.75 0.352926
Target:  5'- aGUGGGCGgCAAcGGACcgCGCGCGCc -3'
miRNA:   3'- aCGUCCGCgGUUcUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101030 0.75 0.329859
Target:  5'- gGCAGGCGCCGc-AGGCUcCGCcgccGCGCg -3'
miRNA:   3'- aCGUCCGCGGUucUCUGAaGCG----CGCG- -5'
6357 5' -57.2 NC_001847.1 + 127294 0.75 0.337423
Target:  5'- cUGCAGGCGCCAccggcggugccGGAGACacggCGaccgGCGCc -3'
miRNA:   3'- -ACGUCCGCGGU-----------UCUCUGaa--GCg---CGCG- -5'
6357 5' -57.2 NC_001847.1 + 74382 0.75 0.340483
Target:  5'- gGUagAGGCGCUggGGGACcgcgcggccgccgCGCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGuuCUCUGaa-----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 12432 0.75 0.322421
Target:  5'- gUGCGGGCuCCAAGGcgccGGCacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUUCU----CUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 46518 0.75 0.329859
Target:  5'- aGCGGcaGCGCuCGGGGGGCggcggcggCGCGCGCg -3'
miRNA:   3'- aCGUC--CGCG-GUUCUCUGaa------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 91662 0.75 0.352926
Target:  5'- gGC-GGCGCgGcGGGACgcgaUCGCGCGCu -3'
miRNA:   3'- aCGuCCGCGgUuCUCUGa---AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33562 0.75 0.352926
Target:  5'- gGCAGaCGCCGcGGAGGCggcCGUGCGCg -3'
miRNA:   3'- aCGUCcGCGGU-UCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 47685 0.74 0.368927
Target:  5'- aGCGGGCgcgcGCCGcGGGGCcguugagCGCGCGCa -3'
miRNA:   3'- aCGUCCG----CGGUuCUCUGaa-----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 105738 0.74 0.393844
Target:  5'- cGCAGGUcaaaccagGUUAGGAgGGCcUCGCGCGCg -3'
miRNA:   3'- aCGUCCG--------CGGUUCU-CUGaAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101864 0.74 0.393844
Target:  5'- aGCAGGuCGCgGAgGAGcucgcCUUUGCGCGCg -3'
miRNA:   3'- aCGUCC-GCGgUU-CUCu----GAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 57997 0.74 0.393844
Target:  5'- cGguGGCgGCgCAGGcGGCggcggUCGCGCGCg -3'
miRNA:   3'- aCguCCG-CG-GUUCuCUGa----AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 38568 0.74 0.402388
Target:  5'- cGcCGGGCGcCCAGGcacacggccagcAGACcgCGCGCGCg -3'
miRNA:   3'- aC-GUCCGC-GGUUC------------UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 83580 0.74 0.360865
Target:  5'- gGUAGGCGCCcgcgagcccGAGcACgcgCGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGuu-------CUC-UGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 86973 0.74 0.377112
Target:  5'- aGCAGGaCGCCGccGGccGGGCcggCGCGCGCc -3'
miRNA:   3'- aCGUCC-GCGGU--UC--UCUGaa-GCGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.