miRNA display CGI


Results 41 - 60 of 640 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 10561 0.7 0.604955
Target:  5'- gGCcGGCGCCGGGcccGGCgccggcggccccccCGCGCGCg -3'
miRNA:   3'- aCGuCCGCGGUUCu--CUGaa------------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 10750 0.68 0.716269
Target:  5'- -aCAGGCGCauuuucuggcAGAG-CUgCGCGCGCg -3'
miRNA:   3'- acGUCCGCGgu--------UCUCuGAaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 10876 0.69 0.685999
Target:  5'- cGCGGGCGcCCAGGcAGACcgccUGCG-GCa -3'
miRNA:   3'- aCGUCCGC-GGUUC-UCUGaa--GCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 11267 0.68 0.727217
Target:  5'- cGCGGGCGCU---GGGCUUCcugaauuaccaaguaCGCGCg -3'
miRNA:   3'- aCGUCCGCGGuucUCUGAAGc--------------GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 11336 0.7 0.614196
Target:  5'- gGCuGGCGCCGgagcgGGAGcACUcguaCGCGCGg -3'
miRNA:   3'- aCGuCCGCGGU-----UCUC-UGAa---GCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 11803 0.69 0.685999
Target:  5'- cGCGGGUGCUuuccgucAGACggcacaGCGCGCg -3'
miRNA:   3'- aCGUCCGCGGuuc----UCUGaag---CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 11841 0.68 0.706239
Target:  5'- gGgGGGCGCCuAGcggaggauGGACUugagUCGCGCuGCu -3'
miRNA:   3'- aCgUCCGCGGuUC--------UCUGA----AGCGCG-CG- -5'
6357 5' -57.2 NC_001847.1 + 12039 0.66 0.802148
Target:  5'- gGCGGaGCGCU---GGACgcccUGCGCGCu -3'
miRNA:   3'- aCGUC-CGCGGuucUCUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 12205 0.67 0.78392
Target:  5'- cGUAGGUGCgCuucuGGCUUgcgcggCGCGCGCa -3'
miRNA:   3'- aCGUCCGCG-GuucuCUGAA------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 12432 0.75 0.322421
Target:  5'- gUGCGGGCuCCAAGGcgccGGCacagCGCGCGCg -3'
miRNA:   3'- -ACGUCCGcGGUUCU----CUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 12558 0.69 0.685999
Target:  5'- cGCAGGUGCgCAAcGGGCgcCGCGUacGCg -3'
miRNA:   3'- aCGUCCGCG-GUUcUCUGaaGCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 13117 0.66 0.844853
Target:  5'- gGCcgGGGCGCgCGGGcGGCgcCGCGcCGCc -3'
miRNA:   3'- aCG--UCCGCG-GUUCuCUGaaGCGC-GCG- -5'
6357 5' -57.2 NC_001847.1 + 13347 0.72 0.513291
Target:  5'- aGCAGGCGCCcgcGAG-GACgcUCcagccgcgaacgGCGCGCa -3'
miRNA:   3'- aCGUCCGCGG---UUCuCUGa-AG------------CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 13402 0.7 0.624477
Target:  5'- cGCGGGCcCUggGAGAaagaCGgGCGCg -3'
miRNA:   3'- aCGUCCGcGGuuCUCUgaa-GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 13992 0.68 0.723247
Target:  5'- cGCGGcuuguaaacGCGCCGAGAGcacggcagcaggcgGCggCGCaGCGCg -3'
miRNA:   3'- aCGUC---------CGCGGUUCUC--------------UGaaGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 14351 0.68 0.714269
Target:  5'- gGC-GGCGCCugcGGGGAacgccgccaGCGCGCg -3'
miRNA:   3'- aCGuCCGCGGu--UCUCUgaag-----CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 14436 0.66 0.819754
Target:  5'- cGCuguuuGGCGCCGAGcGcgcggccgcgcuGCUcggCGUGCGCu -3'
miRNA:   3'- aCGu----CCGCGGUUCuC------------UGAa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 14578 0.69 0.685999
Target:  5'- gGCGGGCGCgcggcucucUAAG-GACgccgUCugGCGCGCg -3'
miRNA:   3'- aCGUCCGCG---------GUUCuCUGa---AG--CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 14948 0.68 0.706239
Target:  5'- aGCGGGCGCC-----GC-UCGCGCGg -3'
miRNA:   3'- aCGUCCGCGGuucucUGaAGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 15307 0.68 0.696146
Target:  5'- gGCAcGGCGUCGGG-GGCcgCGgGCGUa -3'
miRNA:   3'- aCGU-CCGCGGUUCuCUGaaGCgCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.