miRNA display CGI


Results 41 - 60 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 127294 0.75 0.337423
Target:  5'- cUGCAGGCGCCAccggcggugccGGAGACacggCGaccgGCGCc -3'
miRNA:   3'- -ACGUCCGCGGU-----------UCUCUGaa--GCg---CGCG- -5'
6357 5' -57.2 NC_001847.1 + 127197 0.69 0.675807
Target:  5'- cGCAuGGCGCgAAcuccGGCgcggCGCGCGCg -3'
miRNA:   3'- aCGU-CCGCGgUUcu--CUGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 126272 0.66 0.836672
Target:  5'- cGCuGGCGCUcuGGGGCccaaUUGCGCcaGCa -3'
miRNA:   3'- aCGuCCGCGGuuCUCUGa---AGCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 126048 0.72 0.513291
Target:  5'- cGguGGCuCCGAGAGcgGCacccCGCGCGCg -3'
miRNA:   3'- aCguCCGcGGUUCUC--UGaa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 125580 0.69 0.665579
Target:  5'- cGCGGGCGgCGGGcuGGACggcUGCaGCGCu -3'
miRNA:   3'- aCGUCCGCgGUUC--UCUGaa-GCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 125486 0.66 0.811033
Target:  5'- gGCGGGCGCgAGGAcgcccGGCUgcUCGaGCGg -3'
miRNA:   3'- aCGUCCGCGgUUCU-----CUGA--AGCgCGCg -5'
6357 5' -57.2 NC_001847.1 + 125418 0.72 0.493849
Target:  5'- cUGCcccGGCGCCGccGGAGGaccCGCGCGUg -3'
miRNA:   3'- -ACGu--CCGCGGU--UCUCUgaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 125392 0.71 0.529066
Target:  5'- aGCGGGCGCCccGGGGCagggcccgcccggUCGCGUGg -3'
miRNA:   3'- aCGUCCGCGGuuCUCUGa------------AGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 125063 0.71 0.553051
Target:  5'- aGCAGGaagaaGCCGAcGAGcGCgcggcgcagCGCGCGCg -3'
miRNA:   3'- aCGUCCg----CGGUU-CUC-UGaa-------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 124913 0.77 0.254932
Target:  5'- gGCAGGCGCgCcGGGGGCgacagCGgGCGCg -3'
miRNA:   3'- aCGUCCGCG-GuUCUCUGaa---GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 124766 0.68 0.696146
Target:  5'- cGCGGGCGgCAccgggGGGGGCUUUcgGCG-GCg -3'
miRNA:   3'- aCGUCCGCgGU-----UCUCUGAAG--CGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 124582 0.68 0.696146
Target:  5'- cGCcGGCGCCGGGcccGGCgccggcCGgGCGCg -3'
miRNA:   3'- aCGuCCGCGGUUCu--CUGaa----GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 124551 0.68 0.745885
Target:  5'- gGCcGGCGCC----GGCccgCGCGCGCg -3'
miRNA:   3'- aCGuCCGCGGuucuCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 124458 0.66 0.836672
Target:  5'- gGCGGuGCGggAAGcGGCUgguUCGCGUGCg -3'
miRNA:   3'- aCGUC-CGCggUUCuCUGA---AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 124160 1.11 0.001409
Target:  5'- gUGCAGGCGCCAAGAGACUUCGCGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUCUCUGAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 123845 0.72 0.501587
Target:  5'- gGCGGGCGCgcccau-CUUCGCGCGUa -3'
miRNA:   3'- aCGUCCGCGguucucuGAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 123505 0.68 0.696146
Target:  5'- aGCGGG-GCCGGGgccaGGGCUgcCGCGgGCu -3'
miRNA:   3'- aCGUCCgCGGUUC----UCUGAa-GCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 123059 0.71 0.563143
Target:  5'- cGCGGGCGCC---GGACc-CGCgGCGCu -3'
miRNA:   3'- aCGUCCGCGGuucUCUGaaGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 122907 0.69 0.665579
Target:  5'- cGCAGcccuCGCCGuucGGGugUgCGCGCGCc -3'
miRNA:   3'- aCGUCc---GCGGUu--CUCugAaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 122713 0.7 0.614196
Target:  5'- gUGCcGGCGCCuuGGAGcccgcACUcaaaUCGCGCGg -3'
miRNA:   3'- -ACGuCCGCGGu-UCUC-----UGA----AGCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.