miRNA display CGI


Results 41 - 60 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 77222 0.79 0.194552
Target:  5'- cGCGGGcCGCCGGGcccGGACUUgGCGCGg -3'
miRNA:   3'- aCGUCC-GCGGUUC---UCUGAAgCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 59863 0.73 0.428715
Target:  5'- cGCGGuCGCCGAGGGcCggCGCGCGg -3'
miRNA:   3'- aCGUCcGCGGUUCUCuGaaGCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 78237 0.72 0.503529
Target:  5'- gGCGGGUucGCCcuGGAGGCcgacgUCGCcGCGCa -3'
miRNA:   3'- aCGUCCG--CGGu-UCUCUGa----AGCG-CGCG- -5'
6357 5' -57.2 NC_001847.1 + 6893 0.72 0.493849
Target:  5'- aGCAGuGCGUCGGcGAG-CgcgCGCGCGCc -3'
miRNA:   3'- aCGUC-CGCGGUU-CUCuGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 28086 0.73 0.428715
Target:  5'- gUGCuguGGCGCCugcccGGGGC--CGCGCGCg -3'
miRNA:   3'- -ACGu--CCGCGGuu---CUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34655 0.76 0.300863
Target:  5'- aGCGGcGCGCCgAGGGGGCggcCGCGCaGCg -3'
miRNA:   3'- aCGUC-CGCGG-UUCUCUGaa-GCGCG-CG- -5'
6357 5' -57.2 NC_001847.1 + 33841 0.79 0.189732
Target:  5'- cGCGGGCGCgCAgagcgcAGAgGACUgCGCGCGCu -3'
miRNA:   3'- aCGUCCGCG-GU------UCU-CUGAaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 64874 0.79 0.185017
Target:  5'- cGCAGGCgcgcGCCGAGAGcaACgcCGCGCGCc -3'
miRNA:   3'- aCGUCCG----CGGUUCUC--UGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 74382 0.75 0.340483
Target:  5'- gGUagAGGCGCUggGGGACcgcgcggccgccgCGCGCGCg -3'
miRNA:   3'- aCG--UCCGCGGuuCUCUGaa-----------GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 22195 0.74 0.393844
Target:  5'- cGCGGGCGCUggGccguGCUgaagCGCGUGCc -3'
miRNA:   3'- aCGUCCGCGGuuCuc--UGAa---GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 101559 0.74 0.376288
Target:  5'- cGCAGGcCGCCGAGcccgggccgcgccAGACgcccccCGCGUGCg -3'
miRNA:   3'- aCGUCC-GCGGUUC-------------UCUGaa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 63164 0.76 0.315109
Target:  5'- cGCAGGCGCgCAcgucGGucGCggUCGCGCGCc -3'
miRNA:   3'- aCGUCCGCG-GU----UCucUGa-AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34299 0.78 0.214914
Target:  5'- cGCGGcCGUCAGcGAGGCUUCGgGCGCg -3'
miRNA:   3'- aCGUCcGCGGUU-CUCUGAAGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 52613 0.73 0.45603
Target:  5'- gGC-GGCGCCuuu-GACUUCGgCGCGUg -3'
miRNA:   3'- aCGuCCGCGGuucuCUGAAGC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 59499 0.73 0.455104
Target:  5'- gGCAGgggguGCGCCGAGGccgcaccGGCUUgGUGCGCu -3'
miRNA:   3'- aCGUC-----CGCGGUUCU-------CUGAAgCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 55685 0.73 0.419826
Target:  5'- cGCAGGCgGCCGGG-GAaaacucgcgcuuCUUCGUGUGCc -3'
miRNA:   3'- aCGUCCG-CGGUUCuCU------------GAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 47555 0.72 0.474752
Target:  5'- gGCGGGCGCgGGGAGcccgGCggC-CGCGCa -3'
miRNA:   3'- aCGUCCGCGgUUCUC----UGaaGcGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 64254 0.66 0.84566
Target:  5'- gGCGGGCcCUAGGGGACUauaaagcugccccugCGCuCGCu -3'
miRNA:   3'- aCGUCCGcGGUUCUCUGAa--------------GCGcGCG- -5'
6357 5' -57.2 NC_001847.1 + 79063 0.72 0.503529
Target:  5'- cGC-GGCGCC-GGAGcCgggCGCGUGCg -3'
miRNA:   3'- aCGuCCGCGGuUCUCuGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 66060 0.72 0.474752
Target:  5'- gGCGgcGGCGCCGGG-GGCgaCGCGgGCu -3'
miRNA:   3'- aCGU--CCGCGGUUCuCUGaaGCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.