Results 41 - 60 of 640 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 60299 | 0.73 | 0.419826 |
Target: 5'- aGCgGGGCGgCGGGcGGCagCGCGCGCg -3' miRNA: 3'- aCG-UCCGCgGUUCuCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 82345 | 0.76 | 0.315109 |
Target: 5'- gUGCGcGGCGCCAGGGcGcACUgcacaugagCGCGCGCc -3' miRNA: 3'- -ACGU-CCGCGGUUCU-C-UGAa--------GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 49729 | 0.81 | 0.136073 |
Target: 5'- aGUGGGCGCCGGcGAGGCggUGCGCGUg -3' miRNA: 3'- aCGUCCGCGGUU-CUCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 3677 | 0.73 | 0.41105 |
Target: 5'- aGCAGGcCGCCGcGAGcCU--GCGCGCa -3' miRNA: 3'- aCGUCC-GCGGUuCUCuGAagCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 51524 | 0.82 | 0.122275 |
Target: 5'- gGCGGGCaacGCCAacaugucGGAGGCUgcgCGCGCGCg -3' miRNA: 3'- aCGUCCG---CGGU-------UCUCUGAa--GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 116696 | 0.72 | 0.497711 |
Target: 5'- cGCGGGCGUCGucgcguacGAGAUgcuggcauacccgCGCGCGCu -3' miRNA: 3'- aCGUCCGCGGUu-------CUCUGaa-----------GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 64874 | 0.79 | 0.185017 |
Target: 5'- cGCAGGCgcgcGCCGAGAGcaACgcCGCGCGCc -3' miRNA: 3'- aCGUCCG----CGGUUCUC--UGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 5730 | 0.72 | 0.493849 |
Target: 5'- gGCGGGCGUCGcaucaGGGGACgcaccgccgUCcgGCGCGCc -3' miRNA: 3'- aCGUCCGCGGU-----UCUCUGa--------AG--CGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 66060 | 0.72 | 0.474752 |
Target: 5'- gGCGgcGGCGCCGGG-GGCgaCGCGgGCu -3' miRNA: 3'- aCGU--CCGCGGUUCuCUGaaGCGCgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 21324 | 0.73 | 0.455104 |
Target: 5'- cGCgGGGUGCCAAGgccauuguggcgcAGACgaUGCGCGCc -3' miRNA: 3'- aCG-UCCGCGGUUC-------------UCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 77084 | 0.73 | 0.437714 |
Target: 5'- cGCGcGCGCCAAucGGCggccCGCGCGCg -3' miRNA: 3'- aCGUcCGCGGUUcuCUGaa--GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 51061 | 0.73 | 0.428715 |
Target: 5'- aGCAGGC-CaccGAGGCgUUCGUGCGCg -3' miRNA: 3'- aCGUCCGcGguuCUCUG-AAGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 55685 | 0.73 | 0.419826 |
Target: 5'- cGCAGGCgGCCGGG-GAaaacucgcgcuuCUUCGUGUGCc -3' miRNA: 3'- aCGUCCG-CGGUUCuCU------------GAAGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 35470 | 0.74 | 0.392149 |
Target: 5'- cGCgagAGGCGCU-AGAGGCggcaaaggcggCGCGCGCg -3' miRNA: 3'- aCG---UCCGCGGuUCUCUGaa---------GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 36013 | 0.75 | 0.352926 |
Target: 5'- cGCGGGCGUgGugcuGGGGCUgCGCGCGg -3' miRNA: 3'- aCGUCCGCGgUu---CUCUGAaGCGCGCg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 40158 | 0.75 | 0.352139 |
Target: 5'- cGCAGcuGCGCCAaagccgcGGGGGCUgCGCGCGg -3' miRNA: 3'- aCGUC--CGCGGU-------UCUCUGAaGCGCGCg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 63164 | 0.76 | 0.315109 |
Target: 5'- cGCAGGCGCgCAcgucGGucGCggUCGCGCGCc -3' miRNA: 3'- aCGUCCGCG-GU----UCucUGa-AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 32841 | 0.76 | 0.293928 |
Target: 5'- cGCGuGGcCGCCGAGAccgcGGCgcUCGCGCGCg -3' miRNA: 3'- aCGU-CC-GCGGUUCU----CUGa-AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 131135 | 0.77 | 0.241147 |
Target: 5'- gGCGGGCGCCGGGcccggcgccccgcgGGGC--CGCGCGCc -3' miRNA: 3'- aCGUCCGCGGUUC--------------UCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 51266 | 0.79 | 0.194552 |
Target: 5'- cUGCGGGCaGCCGGuGGACgggcgcaacuUUCGCGCGCa -3' miRNA: 3'- -ACGUCCG-CGGUUcUCUG----------AAGCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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