miRNA display CGI


Results 1 - 20 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 124160 1.11 0.001409
Target:  5'- gUGCAGGCGCCAAGAGACUUCGCGCGCc -3'
miRNA:   3'- -ACGUCCGCGGUUCUCUGAAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33517 0.83 0.113313
Target:  5'- gGCGGGCGCCGccgcGGAGGCgcCGgGCGCg -3'
miRNA:   3'- aCGUCCGCGGU----UCUCUGaaGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 51524 0.82 0.122275
Target:  5'- gGCGGGCaacGCCAacaugucGGAGGCUgcgCGCGCGCg -3'
miRNA:   3'- aCGUCCG---CGGU-------UCUCUGAa--GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 49729 0.81 0.136073
Target:  5'- aGUGGGCGCCGGcGAGGCggUGCGCGUg -3'
miRNA:   3'- aCGUCCGCGGUU-CUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 100525 0.81 0.150899
Target:  5'- cGCAGGCGCC---GGACUUCcucgGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGuucUCUGAAG----CGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 73247 0.81 0.150899
Target:  5'- cGCGGGCGCgCucGAGGCcgUGCGCGCa -3'
miRNA:   3'- aCGUCCGCG-GuuCUCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 58059 0.8 0.171489
Target:  5'- cGCGGGcCGCCGAuuGGCgcgCGCGCGCg -3'
miRNA:   3'- aCGUCC-GCGGUUcuCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 78122 0.8 0.171489
Target:  5'- cGCGGGCGCCAAaAG-CgggCGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUcUCuGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 64874 0.79 0.185017
Target:  5'- cGCAGGCgcgcGCCGAGAGcaACgcCGCGCGCc -3'
miRNA:   3'- aCGUCCG----CGGUUCUC--UGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 33841 0.79 0.189732
Target:  5'- cGCGGGCGCgCAgagcgcAGAgGACUgCGCGCGCu -3'
miRNA:   3'- aCGUCCGCG-GU------UCU-CUGAaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 51266 0.79 0.194552
Target:  5'- cUGCGGGCaGCCGGuGGACgggcgcaacuUUCGCGCGCa -3'
miRNA:   3'- -ACGUCCG-CGGUUcUCUG----------AAGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 77222 0.79 0.194552
Target:  5'- cGCGGGcCGCCGGGcccGGACUUgGCGCGg -3'
miRNA:   3'- aCGUCC-GCGGUUC---UCUGAAgCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 103110 0.79 0.196509
Target:  5'- cGCGGGCGCCGuccccgcgccccgccGGAG-CUUCGCGCu- -3'
miRNA:   3'- aCGUCCGCGGU---------------UCUCuGAAGCGCGcg -5'
6357 5' -57.2 NC_001847.1 + 297 0.79 0.196509
Target:  5'- cGCGGGCGCCGuccccgcgccccgccGGAG-CUUCGCGCu- -3'
miRNA:   3'- aCGUCCGCGGU---------------UCUCuGAAGCGCGcg -5'
6357 5' -57.2 NC_001847.1 + 130613 0.79 0.209658
Target:  5'- cGCGGGCggccGCCGcGAGGCacgUCGUGCGCa -3'
miRNA:   3'- aCGUCCG----CGGUuCUCUGa--AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 130184 0.78 0.214383
Target:  5'- cGCGGGCGCCcggccugAAGAGACgggCG-GCGCg -3'
miRNA:   3'- aCGUCCGCGG-------UUCUCUGaa-GCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 34299 0.78 0.214914
Target:  5'- cGCGGcCGUCAGcGAGGCUUCGgGCGCg -3'
miRNA:   3'- aCGUCcGCGGUU-CUCUGAAGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 31299 0.78 0.219741
Target:  5'- gGCGGGCGCgGGGAGcggGCUcugcugcguguuuUCGCGCGUg -3'
miRNA:   3'- aCGUCCGCGgUUCUC---UGA-------------AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 28322 0.77 0.241147
Target:  5'- gGCGGGCGCCGGGcccggcgccccgcgGGGC--CGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUC--------------UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 131135 0.77 0.241147
Target:  5'- gGCGGGCGCCGGGcccggcgccccgcgGGGC--CGCGCGCc -3'
miRNA:   3'- aCGUCCGCGGUUC--------------UCUGaaGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.