Results 1 - 20 of 640 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 33517 | 0.83 | 0.113313 |
Target: 5'- gGCGGGCGCCGccgcGGAGGCgcCGgGCGCg -3' miRNA: 3'- aCGUCCGCGGU----UCUCUGaaGCgCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 82345 | 0.76 | 0.315109 |
Target: 5'- gUGCGcGGCGCCAGGGcGcACUgcacaugagCGCGCGCc -3' miRNA: 3'- -ACGU-CCGCGGUUCU-C-UGAa--------GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 63164 | 0.76 | 0.315109 |
Target: 5'- cGCAGGCGCgCAcgucGGucGCggUCGCGCGCc -3' miRNA: 3'- aCGUCCGCG-GU----UCucUGa-AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 64254 | 0.66 | 0.84566 |
Target: 5'- gGCGGGCcCUAGGGGACUauaaagcugccccugCGCuCGCu -3' miRNA: 3'- aCGUCCGcGGUUCUCUGAa--------------GCGcGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 64874 | 0.79 | 0.185017 |
Target: 5'- cGCAGGCgcgcGCCGAGAGcaACgcCGCGCGCc -3' miRNA: 3'- aCGUCCG----CGGUUCUC--UGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 33841 | 0.79 | 0.189732 |
Target: 5'- cGCGGGCGCgCAgagcgcAGAgGACUgCGCGCGCu -3' miRNA: 3'- aCGUCCGCG-GU------UCU-CUGAaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 51266 | 0.79 | 0.194552 |
Target: 5'- cUGCGGGCaGCCGGuGGACgggcgcaacuUUCGCGCGCa -3' miRNA: 3'- -ACGUCCG-CGGUUcUCUG----------AAGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 103110 | 0.79 | 0.196509 |
Target: 5'- cGCGGGCGCCGuccccgcgccccgccGGAG-CUUCGCGCu- -3' miRNA: 3'- aCGUCCGCGGU---------------UCUCuGAAGCGCGcg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 131135 | 0.77 | 0.241147 |
Target: 5'- gGCGGGCGCCGGGcccggcgccccgcgGGGC--CGCGCGCc -3' miRNA: 3'- aCGUCCGCGGUUC--------------UCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 55368 | 0.76 | 0.300863 |
Target: 5'- cGCGGGCGCC-GGAGACggUCG-GCGa -3' miRNA: 3'- aCGUCCGCGGuUCUCUGa-AGCgCGCg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 77664 | 0.77 | 0.273225 |
Target: 5'- cGCGGGCGCCGAgguacugcuggccGAGcGCUUCaaggcggcguGCGCGCg -3' miRNA: 3'- aCGUCCGCGGUU-------------CUC-UGAAG----------CGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 31299 | 0.78 | 0.219741 |
Target: 5'- gGCGGGCGCgGGGAGcggGCUcugcugcguguuuUCGCGCGUg -3' miRNA: 3'- aCGUCCGCGgUUCUC---UGA-------------AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 51524 | 0.82 | 0.122275 |
Target: 5'- gGCGGGCaacGCCAacaugucGGAGGCUgcgCGCGCGCg -3' miRNA: 3'- aCGUCCG---CGGU-------UCUCUGAa--GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 32841 | 0.76 | 0.293928 |
Target: 5'- cGCGuGGcCGCCGAGAccgcGGCgcUCGCGCGCg -3' miRNA: 3'- aCGU-CC-GCGGUUCU----CUGa-AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 49729 | 0.81 | 0.136073 |
Target: 5'- aGUGGGCGCCGGcGAGGCggUGCGCGUg -3' miRNA: 3'- aCGUCCGCGGUU-CUCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 34299 | 0.78 | 0.214914 |
Target: 5'- cGCGGcCGUCAGcGAGGCUUCGgGCGCg -3' miRNA: 3'- aCGUCcGCGGUU-CUCUGAAGCgCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 34655 | 0.76 | 0.300863 |
Target: 5'- aGCGGcGCGCCgAGGGGGCggcCGCGCaGCg -3' miRNA: 3'- aCGUC-CGCGG-UUCUCUGaa-GCGCG-CG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 24515 | 0.76 | 0.315109 |
Target: 5'- cGUGGGCGUC--GGGGC-UCGCGCGCu -3' miRNA: 3'- aCGUCCGCGGuuCUCUGaAGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 78122 | 0.8 | 0.171489 |
Target: 5'- cGCGGGCGCCAAaAG-CgggCGCGCGCc -3' miRNA: 3'- aCGUCCGCGGUUcUCuGaa-GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 77222 | 0.79 | 0.194552 |
Target: 5'- cGCGGGcCGCCGGGcccGGACUUgGCGCGg -3' miRNA: 3'- aCGUCC-GCGGUUC---UCUGAAgCGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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