Results 21 - 40 of 640 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 29008 | 0.66 | 0.844853 |
Target: 5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3' miRNA: 3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 119542 | 0.66 | 0.844853 |
Target: 5'- gGCAGGCugGgCAAGGGGCg-CGCG-GCc -3' miRNA: 3'- aCGUCCG--CgGUUCUCUGaaGCGCgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 69493 | 0.66 | 0.844853 |
Target: 5'- gUGCGGGCGCgCAcGcGGCcgUUgGCgGCGCa -3' miRNA: 3'- -ACGUCCGCG-GUuCuCUG--AAgCG-CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 99516 | 0.66 | 0.844853 |
Target: 5'- aGUuuGCGCCGAGccccGCgcCGCGCGCu -3' miRNA: 3'- aCGucCGCGGUUCuc--UGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 131821 | 0.66 | 0.844853 |
Target: 5'- gGCcGGCGCCGgcggcAGcGGCgccCGCGcCGCg -3' miRNA: 3'- aCGuCCGCGGU-----UCuCUGaa-GCGC-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 76705 | 0.66 | 0.836672 |
Target: 5'- cGCGGgaggaggcGCGCCGGGAagGACggUCGgGCGg -3' miRNA: 3'- aCGUC--------CGCGGUUCU--CUGa-AGCgCGCg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 38431 | 0.66 | 0.836672 |
Target: 5'- gGCGGGaGcCCGAGGGGCgggcaUCGCaGuCGCg -3' miRNA: 3'- aCGUCCgC-GGUUCUCUGa----AGCG-C-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 5071 | 0.66 | 0.836672 |
Target: 5'- gGCGcGGC-CCAGGAcGGCgaCGCGuCGCc -3' miRNA: 3'- aCGU-CCGcGGUUCU-CUGaaGCGC-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 77510 | 0.66 | 0.836672 |
Target: 5'- cGguGGC-CgGGGAG-C-UCGCGCGUg -3' miRNA: 3'- aCguCCGcGgUUCUCuGaAGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 78694 | 0.66 | 0.836672 |
Target: 5'- cGCuGGUGCCGGGcAGcACgcgagUGCGgGCg -3' miRNA: 3'- aCGuCCGCGGUUC-UC-UGaa---GCGCgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 108020 | 0.66 | 0.836672 |
Target: 5'- gGCAGuuucgcgaCGUCgAAGAGGCUUgGCGCGa -3' miRNA: 3'- aCGUCc-------GCGG-UUCUCUGAAgCGCGCg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 133815 | 0.66 | 0.836672 |
Target: 5'- gGCGcGGCGCUggGgcucggggagccGGACUUCGUggaGgGCg -3' miRNA: 3'- aCGU-CCGCGGuuC------------UCUGAAGCG---CgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 31653 | 0.66 | 0.836672 |
Target: 5'- gGCGGGC-CC-GGAGcc--CGCGCGCc -3' miRNA: 3'- aCGUCCGcGGuUCUCugaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 65631 | 0.66 | 0.836672 |
Target: 5'- cGCAGGgcuuggcugcgcCGCCAAc-GGCcgCGUGCGCg -3' miRNA: 3'- aCGUCC------------GCGGUUcuCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 31002 | 0.66 | 0.836672 |
Target: 5'- gGCGcGGCGCUggGgcucggggagccGGACUUCGUggaGgGCg -3' miRNA: 3'- aCGU-CCGCGGuuC------------UCUGAAGCG---CgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 31199 | 0.66 | 0.836672 |
Target: 5'- cGCcgAGGCGCCGccgcuggugcuGGAGGCcgCGgCgGCGCc -3' miRNA: 3'- aCG--UCCGCGGU-----------UCUCUGaaGC-G-CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 43215 | 0.66 | 0.836672 |
Target: 5'- uUGCucGGCGCCGuugcccGGuGGCgguggggGCGCGCg -3' miRNA: 3'- -ACGu-CCGCGGU------UCuCUGaag----CGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 115918 | 0.66 | 0.836672 |
Target: 5'- cGCAGGCGCU----GGCUgUCGCaGCGg -3' miRNA: 3'- aCGUCCGCGGuucuCUGA-AGCG-CGCg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 124458 | 0.66 | 0.836672 |
Target: 5'- gGCGGuGCGggAAGcGGCUgguUCGCGUGCg -3' miRNA: 3'- aCGUC-CGCggUUCuCUGA---AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 101927 | 0.66 | 0.836672 |
Target: 5'- gGCGcGGCGCCAAgccGAGccacccgcgccGCcaagUCGgGCGCa -3' miRNA: 3'- aCGU-CCGCGGUU---CUC-----------UGa---AGCgCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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