miRNA display CGI


Results 41 - 60 of 640 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6357 5' -57.2 NC_001847.1 + 76705 0.66 0.836672
Target:  5'- cGCGGgaggaggcGCGCCGGGAagGACggUCGgGCGg -3'
miRNA:   3'- aCGUC--------CGCGGUUCU--CUGa-AGCgCGCg -5'
6357 5' -57.2 NC_001847.1 + 101927 0.66 0.836672
Target:  5'- gGCGcGGCGCCAAgccGAGccacccgcgccGCcaagUCGgGCGCa -3'
miRNA:   3'- aCGU-CCGCGGUU---CUC-----------UGa---AGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 124458 0.66 0.836672
Target:  5'- gGCGGuGCGggAAGcGGCUgguUCGCGUGCg -3'
miRNA:   3'- aCGUC-CGCggUUCuCUGA---AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 115918 0.66 0.836672
Target:  5'- cGCAGGCGCU----GGCUgUCGCaGCGg -3'
miRNA:   3'- aCGUCCGCGGuucuCUGA-AGCG-CGCg -5'
6357 5' -57.2 NC_001847.1 + 126272 0.66 0.836672
Target:  5'- cGCuGGCGCUcuGGGGCccaaUUGCGCcaGCa -3'
miRNA:   3'- aCGuCCGCGGuuCUCUGa---AGCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 945 0.66 0.836672
Target:  5'- aGCccGCGCCcGGGGACgacUGCGCcgGCa -3'
miRNA:   3'- aCGucCGCGGuUCUCUGaa-GCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 78694 0.66 0.836672
Target:  5'- cGCuGGUGCCGGGcAGcACgcgagUGCGgGCg -3'
miRNA:   3'- aCGuCCGCGGUUC-UC-UGaa---GCGCgCG- -5'
6357 5' -57.2 NC_001847.1 + 102431 0.66 0.836672
Target:  5'- cUGCacGGGCGCCuugcacAGcGGGCaggUCGgGCGCc -3'
miRNA:   3'- -ACG--UCCGCGGu-----UC-UCUGa--AGCgCGCG- -5'
6357 5' -57.2 NC_001847.1 + 47965 0.66 0.835843
Target:  5'- aGCAGcGCGUgGAggauguuGAGGCUgUCGCucGCGCu -3'
miRNA:   3'- aCGUC-CGCGgUU-------CUCUGA-AGCG--CGCG- -5'
6357 5' -57.2 NC_001847.1 + 97578 0.66 0.835843
Target:  5'- aGCGGccaGCGCCGccgcgucuuccgaAGGGcCgcccgUCGCGUGCa -3'
miRNA:   3'- aCGUC---CGCGGU-------------UCUCuGa----AGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 83954 0.66 0.835013
Target:  5'- cGCGGG-GCCGggggcGGAGACguguaccguacCGCGCGa -3'
miRNA:   3'- aCGUCCgCGGU-----UCUCUGaa---------GCGCGCg -5'
6357 5' -57.2 NC_001847.1 + 58206 0.66 0.834181
Target:  5'- aGCAGGCGCUccGGGcggaucugcccgccGGGCggcagcggCGgCGCGCg -3'
miRNA:   3'- aCGUCCGCGG--UUC--------------UCUGaa------GC-GCGCG- -5'
6357 5' -57.2 NC_001847.1 + 68741 0.66 0.828303
Target:  5'- aGCccGCGCCGc-GGAUgugCGCGCGUg -3'
miRNA:   3'- aCGucCGCGGUucUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 117893 0.66 0.828303
Target:  5'- cGCAacGGCuacCCcguGGAGGCUcggcaCGCGCGCg -3'
miRNA:   3'- aCGU--CCGc--GGu--UCUCUGAa----GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 81858 0.66 0.828303
Target:  5'- aGC-GGCGU---GAGGCggaCGCGCGCc -3'
miRNA:   3'- aCGuCCGCGguuCUCUGaa-GCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 89770 0.66 0.828303
Target:  5'- gUGCAcGCGCCGGcguacGAGGCcgucaUCGCGCugGCg -3'
miRNA:   3'- -ACGUcCGCGGUU-----CUCUGa----AGCGCG--CG- -5'
6357 5' -57.2 NC_001847.1 + 33656 0.66 0.828303
Target:  5'- aGCcGGCGCCucGGucGCUa-GCGCGCc -3'
miRNA:   3'- aCGuCCGCGGu-UCucUGAagCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 52399 0.66 0.828303
Target:  5'- gGCAaGCGCUccAGcgcGGGCggCGCGCGCu -3'
miRNA:   3'- aCGUcCGCGGu-UC---UCUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 131334 0.66 0.828303
Target:  5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3'
miRNA:   3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5'
6357 5' -57.2 NC_001847.1 + 96337 0.66 0.828303
Target:  5'- gGUGGGCGgCGGGcuGGCgugCGaCGCGCu -3'
miRNA:   3'- aCGUCCGCgGUUCu-CUGaa-GC-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.