Results 41 - 60 of 640 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6357 | 5' | -57.2 | NC_001847.1 | + | 134012 | 0.66 | 0.836672 |
Target: 5'- cGCcgAGGCGCCGccgcuggugcuGGAGGCcgCGgCgGCGCc -3' miRNA: 3'- aCG--UCCGCGGU-----------UCUCUGaaGC-G-CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 133815 | 0.66 | 0.836672 |
Target: 5'- gGCGcGGCGCUggGgcucggggagccGGACUUCGUggaGgGCg -3' miRNA: 3'- aCGU-CCGCGGuuC------------UCUGAAGCG---CgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 78694 | 0.66 | 0.836672 |
Target: 5'- cGCuGGUGCCGGGcAGcACgcgagUGCGgGCg -3' miRNA: 3'- aCGuCCGCGGUUC-UC-UGaa---GCGCgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 33909 | 0.66 | 0.836672 |
Target: 5'- gGcCAGGCuGCUcgGGGAGGCUggccucccCGUGUGCa -3' miRNA: 3'- aC-GUCCG-CGG--UUCUCUGAa-------GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 7738 | 0.66 | 0.836672 |
Target: 5'- cGCGGGCGC--GGAGGCggCGgccaGgGCa -3' miRNA: 3'- aCGUCCGCGguUCUCUGaaGCg---CgCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 31653 | 0.66 | 0.836672 |
Target: 5'- gGCGGGC-CC-GGAGcc--CGCGCGCc -3' miRNA: 3'- aCGUCCGcGGuUCUCugaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 38431 | 0.66 | 0.836672 |
Target: 5'- gGCGGGaGcCCGAGGGGCgggcaUCGCaGuCGCg -3' miRNA: 3'- aCGUCCgC-GGUUCUCUGa----AGCG-C-GCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 103758 | 0.66 | 0.836672 |
Target: 5'- aGCccGCGCCcGGGGACgacUGCGCcgGCa -3' miRNA: 3'- aCGucCGCGGuUCUCUGaa-GCGCG--CG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 97578 | 0.66 | 0.835843 |
Target: 5'- aGCGGccaGCGCCGccgcgucuuccgaAGGGcCgcccgUCGCGUGCa -3' miRNA: 3'- aCGUC---CGCGGU-------------UCUCuGa----AGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 47965 | 0.66 | 0.835843 |
Target: 5'- aGCAGcGCGUgGAggauguuGAGGCUgUCGCucGCGCu -3' miRNA: 3'- aCGUC-CGCGgUU-------CUCUGA-AGCG--CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 83954 | 0.66 | 0.835013 |
Target: 5'- cGCGGG-GCCGggggcGGAGACguguaccguacCGCGCGa -3' miRNA: 3'- aCGUCCgCGGU-----UCUCUGaa---------GCGCGCg -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 58206 | 0.66 | 0.834181 |
Target: 5'- aGCAGGCGCUccGGGcggaucugcccgccGGGCggcagcggCGgCGCGCg -3' miRNA: 3'- aCGUCCGCGG--UUC--------------UCUGaa------GC-GCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 37202 | 0.66 | 0.828303 |
Target: 5'- gUGCgAGGCGCCcGGuGccGCUUgGCggcgGCGCg -3' miRNA: 3'- -ACG-UCCGCGGuUCuC--UGAAgCG----CGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 89770 | 0.66 | 0.828303 |
Target: 5'- gUGCAcGCGCCGGcguacGAGGCcgucaUCGCGCugGCg -3' miRNA: 3'- -ACGUcCGCGGUU-----CUCUGa----AGCGCG--CG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 131334 | 0.66 | 0.828303 |
Target: 5'- gGCAGcGCGCCGccgccgcccGGCcgCGUGCGCu -3' miRNA: 3'- aCGUC-CGCGGUucu------CUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 33656 | 0.66 | 0.828303 |
Target: 5'- aGCcGGCGCCucGGucGCUa-GCGCGCc -3' miRNA: 3'- aCGuCCGCGGu-UCucUGAagCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 52399 | 0.66 | 0.828303 |
Target: 5'- gGCAaGCGCUccAGcgcGGGCggCGCGCGCu -3' miRNA: 3'- aCGUcCGCGGu-UC---UCUGaaGCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 68741 | 0.66 | 0.828303 |
Target: 5'- aGCccGCGCCGc-GGAUgugCGCGCGUg -3' miRNA: 3'- aCGucCGCGGUucUCUGaa-GCGCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 96337 | 0.66 | 0.828303 |
Target: 5'- gGUGGGCGgCGGGcuGGCgugCGaCGCGCu -3' miRNA: 3'- aCGUCCGCgGUUCu-CUGaa-GC-GCGCG- -5' |
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6357 | 5' | -57.2 | NC_001847.1 | + | 81858 | 0.66 | 0.828303 |
Target: 5'- aGC-GGCGU---GAGGCggaCGCGCGCc -3' miRNA: 3'- aCGuCCGCGguuCUCUGaa-GCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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