miRNA display CGI


Results 61 - 80 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 131631 0.66 0.556581
Target:  5'- gGCCacggCCCGUACACgaaGCU-CGCgCGGCUc -3'
miRNA:   3'- -CGG----GGGCAUGUGg--CGAcGCG-GCCGAu -5'
6358 3' -63 NC_001847.1 + 31884 0.66 0.556581
Target:  5'- cGCCgCCGc-CGCCGCUGCuGCCGccGCc- -3'
miRNA:   3'- -CGGgGGCauGUGGCGACG-CGGC--CGau -5'
6358 3' -63 NC_001847.1 + 58849 0.66 0.546893
Target:  5'- uGCCCgCG-GCGCUGCguccgcGCGCCaGGCa- -3'
miRNA:   3'- -CGGGgGCaUGUGGCGa-----CGCGG-CCGau -5'
6358 3' -63 NC_001847.1 + 58274 0.66 0.546893
Target:  5'- gGCCUCCauGUGCucgGCCGCgGCGaCGGCg- -3'
miRNA:   3'- -CGGGGG--CAUG---UGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 49924 0.66 0.546893
Target:  5'- cGCCUUCGUcgggcucuuuuGCACCGCcgggcUGC-CCGGCg- -3'
miRNA:   3'- -CGGGGGCA-----------UGUGGCG-----ACGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 3117 0.66 0.546893
Target:  5'- gGCCCgCCGcggccgagaGCACCgggagcccgGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCa--------UGUGG---------CGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 43263 0.66 0.546893
Target:  5'- uUCUCUGUGCugCGCguccgGCGCuuCGGCUu -3'
miRNA:   3'- cGGGGGCAUGugGCGa----CGCG--GCCGAu -5'
6358 3' -63 NC_001847.1 + 51490 0.66 0.545928
Target:  5'- cGCCagucaaaCUCGgagcaGCGCCGCgccggugcgGCGCCGGCa- -3'
miRNA:   3'- -CGG-------GGGCa----UGUGGCGa--------CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 3539 0.66 0.544962
Target:  5'- uGgCCCCGgcagcccugcacGCGCCGCUGCaGCaGGCg- -3'
miRNA:   3'- -CgGGGGCa-----------UGUGGCGACG-CGgCCGau -5'
6358 3' -63 NC_001847.1 + 16871 0.66 0.543998
Target:  5'- gGCUCCUGgagagacaucaccacCACCGCUGCgucGCCGGUc- -3'
miRNA:   3'- -CGGGGGCau-------------GUGGCGACG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 61113 0.66 0.546893
Target:  5'- aGCgCCaCGUcCGCCaGCggcacGCGCCGGCg- -3'
miRNA:   3'- -CGgGG-GCAuGUGG-CGa----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 62368 0.66 0.546893
Target:  5'- -gCCCCGUGCGCaGCUggugcgucaGCGCCaGCg- -3'
miRNA:   3'- cgGGGGCAUGUGgCGA---------CGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 95536 0.66 0.556581
Target:  5'- uGCCCCUGgggcuggggccGCGCCGCagcaGCGCUGGg-- -3'
miRNA:   3'- -CGGGGGCa----------UGUGGCGa---CGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 14140 0.66 0.556581
Target:  5'- uGUCUCCGgccgGCugCGCaGCGgCGGCc- -3'
miRNA:   3'- -CGGGGGCa---UGugGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 10045 0.66 0.556581
Target:  5'- cGCgUUCGUcacggccgacacGCGCgCGCUGCGCCGcGCg- -3'
miRNA:   3'- -CGgGGGCA------------UGUG-GCGACGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 118205 0.66 0.55561
Target:  5'- -gCCCCGUcgcGCACUGagcagaccggcguCUGCGCCGaGCg- -3'
miRNA:   3'- cgGGGGCA---UGUGGC-------------GACGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 129362 0.66 0.546893
Target:  5'- uGCCgggCCCGgggcuagACGCCGCgcuucGCGuuGGCg- -3'
miRNA:   3'- -CGG---GGGCa------UGUGGCGa----CGCggCCGau -5'
6358 3' -63 NC_001847.1 + 56790 0.66 0.546893
Target:  5'- cGCCCgCCGUuCGUCGCgcucacgGgGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCAuGUGGCGa------CgCGGCCGau -5'
6358 3' -63 NC_001847.1 + 56473 0.66 0.546893
Target:  5'- cGCCCgCGUGCGCaCGCcgGCGacgcaGGCg- -3'
miRNA:   3'- -CGGGgGCAUGUG-GCGa-CGCgg---CCGau -5'
6358 3' -63 NC_001847.1 + 127415 0.66 0.546893
Target:  5'- cGCCUCCGcgcccGCGCC-CUGCGCCugaaugcccaaGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGcGACGCGG-----------CCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.