miRNA display CGI


Results 41 - 60 of 449 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 101140 0.66 0.576098
Target:  5'- uGCCCa---GCACCGCcGCGaaGGCUGg -3'
miRNA:   3'- -CGGGggcaUGUGGCGaCGCggCCGAU- -5'
6358 3' -63 NC_001847.1 + 130721 0.66 0.576098
Target:  5'- uUCCCUGcgGCGCgCGCUGCcgccGUCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUG-GCGACG----CGGCCGau -5'
6358 3' -63 NC_001847.1 + 2222 0.66 0.576098
Target:  5'- gGCCgCCa-GCGCCGCgGCGCUgGGCg- -3'
miRNA:   3'- -CGGgGGcaUGUGGCGaCGCGG-CCGau -5'
6358 3' -63 NC_001847.1 + 99147 0.66 0.576098
Target:  5'- cGCCCgCGgcCGCCuGCaGCGC-GGCUGc -3'
miRNA:   3'- -CGGGgGCauGUGG-CGaCGCGgCCGAU- -5'
6358 3' -63 NC_001847.1 + 100613 0.66 0.576098
Target:  5'- aGCgCCCGgcggGCGgCGCauCGCCGGCg- -3'
miRNA:   3'- -CGgGGGCa---UGUgGCGacGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 28534 0.66 0.566318
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
6358 3' -63 NC_001847.1 + 132555 0.66 0.566318
Target:  5'- gGCUCgCGUGCgGCCGCgGCGgCCGcGCa- -3'
miRNA:   3'- -CGGGgGCAUG-UGGCGaCGC-GGC-CGau -5'
6358 3' -63 NC_001847.1 + 127415 0.66 0.546893
Target:  5'- cGCCUCCGcgcccGCGCC-CUGCGCCugaaugcccaaGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGcGACGCGG-----------CCGau -5'
6358 3' -63 NC_001847.1 + 56473 0.66 0.546893
Target:  5'- cGCCCgCGUGCGCaCGCcgGCGacgcaGGCg- -3'
miRNA:   3'- -CGGGgGCAUGUG-GCGa-CGCgg---CCGau -5'
6358 3' -63 NC_001847.1 + 56790 0.66 0.546893
Target:  5'- cGCCCgCCGUuCGUCGCgcucacgGgGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCAuGUGGCGa------CgCGGCCGau -5'
6358 3' -63 NC_001847.1 + 129362 0.66 0.546893
Target:  5'- uGCCgggCCCGgggcuagACGCCGCgcuucGCGuuGGCg- -3'
miRNA:   3'- -CGG---GGGCa------UGUGGCGa----CGCggCCGau -5'
6358 3' -63 NC_001847.1 + 118205 0.66 0.55561
Target:  5'- -gCCCCGUcgcGCACUGagcagaccggcguCUGCGCCGaGCg- -3'
miRNA:   3'- cgGGGGCA---UGUGGC-------------GACGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 10045 0.66 0.556581
Target:  5'- cGCgUUCGUcacggccgacacGCGCgCGCUGCGCCGcGCg- -3'
miRNA:   3'- -CGgGGGCA------------UGUG-GCGACGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 14140 0.66 0.556581
Target:  5'- uGUCUCCGgccgGCugCGCaGCGgCGGCc- -3'
miRNA:   3'- -CGGGGGCa---UGugGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 95536 0.66 0.556581
Target:  5'- uGCCCCUGgggcuggggccGCGCCGCagcaGCGCUGGg-- -3'
miRNA:   3'- -CGGGGGCa----------UGUGGCGa---CGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 31884 0.66 0.556581
Target:  5'- cGCCgCCGc-CGCCGCUGCuGCCGccGCc- -3'
miRNA:   3'- -CGGgGGCauGUGGCGACG-CGGC--CGau -5'
6358 3' -63 NC_001847.1 + 131631 0.66 0.556581
Target:  5'- gGCCacggCCCGUACACgaaGCU-CGCgCGGCUc -3'
miRNA:   3'- -CGG----GGGCAUGUGg--CGAcGCG-GCCGAu -5'
6358 3' -63 NC_001847.1 + 33679 0.66 0.556581
Target:  5'- cGCCgCCCuUGCgGCCGC-GCGgCGGCa- -3'
miRNA:   3'- -CGG-GGGcAUG-UGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 86956 0.66 0.557553
Target:  5'- gGCCgCCGgcgcggcacagcaggACGCCGCcgGCcggGCCGGCg- -3'
miRNA:   3'- -CGGgGGCa--------------UGUGGCGa-CG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 49427 0.66 0.566318
Target:  5'- uGCCgCCGUGCACUG--GCGCUuguGGCUc -3'
miRNA:   3'- -CGGgGGCAUGUGGCgaCGCGG---CCGAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.