miRNA display CGI


Results 41 - 60 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 135088 0.73 0.209879
Target:  5'- cGCCCCCGccCGCCGCaaugcacGCGCCGcGCg- -3'
miRNA:   3'- -CGGGGGCauGUGGCGa------CGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 131865 0.73 0.214945
Target:  5'- uGCgCgCCGUGCucgccgGCCGCgcgGCGCCGGCg- -3'
miRNA:   3'- -CGgG-GGCAUG------UGGCGa--CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 103189 0.73 0.214945
Target:  5'- -gCCCCGcGCGCCGC-GCGCCGGa-- -3'
miRNA:   3'- cgGGGGCaUGUGGCGaCGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 29052 0.73 0.214945
Target:  5'- uGCgCgCCGUGCucgccgGCCGCgcgGCGCCGGCg- -3'
miRNA:   3'- -CGgG-GGCAUG------UGGCGa--CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 45160 0.73 0.214945
Target:  5'- aGCCCCgCGgcgcgcaGCACCGCUuccgccgcGCGCUGGCa- -3'
miRNA:   3'- -CGGGG-GCa------UGUGGCGA--------CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 376 0.73 0.214945
Target:  5'- -gCCCCGcGCGCCGC-GCGCCGGa-- -3'
miRNA:   3'- cgGGGGCaUGUGGCGaCGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 77148 0.73 0.220114
Target:  5'- cGCCgCCGccUGCGCCGCcaccGCGCCGGUc- -3'
miRNA:   3'- -CGGgGGC--AUGUGGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 56178 0.73 0.220114
Target:  5'- cGCCCCCGagGCugCGCgaGCGCCaGCc- -3'
miRNA:   3'- -CGGGGGCa-UGugGCGa-CGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 66105 0.73 0.220114
Target:  5'- cGCCCCCGUACGCCGaCaGCGCgacGCa- -3'
miRNA:   3'- -CGGGGGCAUGUGGC-GaCGCGgc-CGau -5'
6358 3' -63 NC_001847.1 + 122694 0.73 0.220114
Target:  5'- aGgCUCCGccGCGCgCGCUGUGCCGGCg- -3'
miRNA:   3'- -CgGGGGCa-UGUG-GCGACGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 82607 0.73 0.220114
Target:  5'- gGCgCCUGUGCGCCGC-GCGCUGGa-- -3'
miRNA:   3'- -CGgGGGCAUGUGGCGaCGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 75807 0.73 0.223796
Target:  5'- cGCCCCCGaUgccgggcugguacgGCGCCGCcgGCGCCGcGCc- -3'
miRNA:   3'- -CGGGGGC-A--------------UGUGGCGa-CGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 13286 0.73 0.22539
Target:  5'- cGgCCCUGUGCGCgCGCUacgcggGCGCCgGGCUGc -3'
miRNA:   3'- -CgGGGGCAUGUG-GCGA------CGCGG-CCGAU- -5'
6358 3' -63 NC_001847.1 + 56053 0.73 0.22539
Target:  5'- aCCCCUGggagGCGCCGCUGaagccUGCgCGGCUGa -3'
miRNA:   3'- cGGGGGCa---UGUGGCGAC-----GCG-GCCGAU- -5'
6358 3' -63 NC_001847.1 + 131206 0.73 0.22539
Target:  5'- cGCCCCCcc-CGCCGCgGCGCCaGCg- -3'
miRNA:   3'- -CGGGGGcauGUGGCGaCGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 49336 0.73 0.22539
Target:  5'- cGCCCCCGU-CGCUGCacGCGCCcGCa- -3'
miRNA:   3'- -CGGGGGCAuGUGGCGa-CGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 28393 0.73 0.22539
Target:  5'- cGCCCCCcc-CGCCGCgGCGCCaGCg- -3'
miRNA:   3'- -CGGGGGcauGUGGCGaCGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 36529 0.73 0.228606
Target:  5'- uGUCCCCGcuugcggggugccGCGCCGCccaaGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa------------UGUGGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 3195 0.72 0.236262
Target:  5'- cGCCgCCGU-CGCCGCcauCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCAuGUGGCGac-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 57643 0.72 0.241862
Target:  5'- aGCuCCCCGgcCACCGaCUcGgGCCGGCg- -3'
miRNA:   3'- -CG-GGGGCauGUGGC-GA-CgCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.