miRNA display CGI


Results 41 - 60 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 9778 0.69 0.362144
Target:  5'- cGCCCCCcgGUGCuaauGCUGUUGCGuCUGGCc- -3'
miRNA:   3'- -CGGGGG--CAUG----UGGCGACGC-GGCCGau -5'
6358 3' -63 NC_001847.1 + 10045 0.66 0.556581
Target:  5'- cGCgUUCGUcacggccgacacGCGCgCGCUGCGCCGcGCg- -3'
miRNA:   3'- -CGgGGGCA------------UGUG-GCGACGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 10161 0.76 0.128105
Target:  5'- cGCCCgagcaggCCG-GC-CCGCUGCGCCGGCUu -3'
miRNA:   3'- -CGGG-------GGCaUGuGGCGACGCGGCCGAu -5'
6358 3' -63 NC_001847.1 + 10236 0.67 0.499367
Target:  5'- cGCCCCCGgcGCGCCuGCcGgGCCcGCUu -3'
miRNA:   3'- -CGGGGGCa-UGUGG-CGaCgCGGcCGAu -5'
6358 3' -63 NC_001847.1 + 10418 0.66 0.566318
Target:  5'- uCCCCCGcGCgguucgcgcuGCCGCccccGCGCCcGGCUc -3'
miRNA:   3'- cGGGGGCaUG----------UGGCGa---CGCGG-CCGAu -5'
6358 3' -63 NC_001847.1 + 10554 0.7 0.332166
Target:  5'- cGCgCCCGgccgGCGCCGggcccgGCGCCGGCn- -3'
miRNA:   3'- -CGgGGGCa---UGUGGCga----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 10586 0.75 0.14919
Target:  5'- gGCCCCCccGCGCgCGCgggccgGCGCCGGCc- -3'
miRNA:   3'- -CGGGGGcaUGUG-GCGa-----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 10697 0.72 0.26537
Target:  5'- cGCgCCCGgGCGCgGCccGCGCCGGCc- -3'
miRNA:   3'- -CGgGGGCaUGUGgCGa-CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 11417 0.69 0.38583
Target:  5'- gGCCCCCGU-CGCCGagcgaagUGCuGCCGuGCg- -3'
miRNA:   3'- -CGGGGGCAuGUGGCg------ACG-CGGC-CGau -5'
6358 3' -63 NC_001847.1 + 11562 0.68 0.444915
Target:  5'- cGCCCagcggGUGCggcuGCCGCgGUGCCGGUUGc -3'
miRNA:   3'- -CGGGgg---CAUG----UGGCGaCGCGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 12615 0.66 0.528641
Target:  5'- gGCCCCCGcuccucaacauggagGCgGCCGCUGCGgCuGCg- -3'
miRNA:   3'- -CGGGGGCa--------------UG-UGGCGACGCgGcCGau -5'
6358 3' -63 NC_001847.1 + 12928 0.7 0.324962
Target:  5'- cGCCCCUGaggGCACC-CgGCcCCGGCUAg -3'
miRNA:   3'- -CGGGGGCa--UGUGGcGaCGcGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 12999 0.68 0.453764
Target:  5'- cGUCCCgCGcgGCGCCcuGC-GCGCCGGCc- -3'
miRNA:   3'- -CGGGG-GCa-UGUGG--CGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 13286 0.73 0.22539
Target:  5'- cGgCCCUGUGCGCgCGCUacgcggGCGCCgGGCUGc -3'
miRNA:   3'- -CgGGGGCAUGUG-GCGA------CGCGG-CCGAU- -5'
6358 3' -63 NC_001847.1 + 14080 0.72 0.26537
Target:  5'- gGCCgCUCGUggACAUCGCggagGCGCUGGCg- -3'
miRNA:   3'- -CGG-GGGCA--UGUGGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 14140 0.66 0.556581
Target:  5'- uGUCUCCGgccgGCugCGCaGCGgCGGCc- -3'
miRNA:   3'- -CGGGGGCa---UGugGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 14418 0.69 0.362144
Target:  5'- aGCCUCUGUGCGgggcuCCGCUguuugGCGCCGaGCg- -3'
miRNA:   3'- -CGGGGGCAUGU-----GGCGA-----CGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 15932 0.67 0.471743
Target:  5'- cGCCCCgCGgugGCCGCgGCGCCGacgaGCUc -3'
miRNA:   3'- -CGGGG-GCaugUGGCGaCGCGGC----CGAu -5'
6358 3' -63 NC_001847.1 + 15991 0.67 0.471743
Target:  5'- cGCCCCgCGgcgGCCGCgGCGCCGacgaGCUc -3'
miRNA:   3'- -CGGGG-GCaugUGGCGaCGCGGC----CGAu -5'
6358 3' -63 NC_001847.1 + 16051 0.68 0.436163
Target:  5'- cGCCCCgCGgcgGCCGCgGCGCCucuGCUGg -3'
miRNA:   3'- -CGGGG-GCaugUGGCGaCGCGGc--CGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.