miRNA display CGI


Results 21 - 40 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 3299 0.69 0.378618
Target:  5'- cGCagCUCGgcgagcgcggcgcggGCGCCGCUGcCGCCGGCg- -3'
miRNA:   3'- -CGg-GGGCa--------------UGUGGCGAC-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 3539 0.66 0.544962
Target:  5'- uGgCCCCGgcagcccugcacGCGCCGCUGCaGCaGGCg- -3'
miRNA:   3'- -CgGGGGCa-----------UGUGGCGACG-CGgCCGau -5'
6358 3' -63 NC_001847.1 + 3713 0.73 0.209879
Target:  5'- gGCCCCgCGgcCGCCGCguaGCGCgCGGCc- -3'
miRNA:   3'- -CGGGG-GCauGUGGCGa--CGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 3932 0.67 0.484541
Target:  5'- cGCCCgCGcugGCGCCGCgGCGgggggggcgccgucuCCGGCg- -3'
miRNA:   3'- -CGGGgGCa--UGUGGCGaCGC---------------GGCCGau -5'
6358 3' -63 NC_001847.1 + 4001 0.67 0.490077
Target:  5'- gGCCCCgCGggGCGCCGg-GC-CCGGCg- -3'
miRNA:   3'- -CGGGG-GCa-UGUGGCgaCGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 4191 0.71 0.271529
Target:  5'- cGCgCCCGUGgGCCGC-GCGCaGGCa- -3'
miRNA:   3'- -CGgGGGCAUgUGGCGaCGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 4293 0.67 0.480868
Target:  5'- cGCCCCCGccucgGCuuCGaugGCGgCGGCUAu -3'
miRNA:   3'- -CGGGGGCa----UGugGCga-CGCgGCCGAU- -5'
6358 3' -63 NC_001847.1 + 4478 0.68 0.427512
Target:  5'- cGCCCCCc-GCGuCC-CUgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGcaUGU-GGcGA-CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 4894 0.76 0.126504
Target:  5'- gGCCCCCGcgccgcugcgaacgACACCGaCcGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa-------------UGUGGC-GaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 5200 0.7 0.317875
Target:  5'- aGCCCUCGccggcucucuCGCCGCgGCgGCCGGCg- -3'
miRNA:   3'- -CGGGGGCau--------GUGGCGaCG-CGGCCGau -5'
6358 3' -63 NC_001847.1 + 5645 0.66 0.53726
Target:  5'- cGCCaaagagCCCGUccagcggaugcGCGCCGUcGCGCgCGGCg- -3'
miRNA:   3'- -CGG------GGGCA-----------UGUGGCGaCGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 5791 0.72 0.241862
Target:  5'- aGCCCCgGgcccgGCACCGCgcuUGCGCuUGGCg- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCG---ACGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 5819 0.7 0.339486
Target:  5'- cGCCCCCGgcC-CCGC-GC-CCGGCa- -3'
miRNA:   3'- -CGGGGGCauGuGGCGaCGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 7203 0.66 0.566318
Target:  5'- cGUCCUCGaGCGCgGCUGgGCCGuccauggcGCUGc -3'
miRNA:   3'- -CGGGGGCaUGUGgCGACgCGGC--------CGAU- -5'
6358 3' -63 NC_001847.1 + 7803 0.69 0.369926
Target:  5'- cGCCCCUGccgcgGCagccgGCCGCcucgGCGCCGGUc- -3'
miRNA:   3'- -CGGGGGCa----UG-----UGGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 7845 0.67 0.480868
Target:  5'- uGUCUCCG-GCACCGCcggugGCGCCuGCa- -3'
miRNA:   3'- -CGGGGGCaUGUGGCGa----CGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 8115 0.71 0.277802
Target:  5'- uGgCCCCGUACaACCGCgGgGCgGGCg- -3'
miRNA:   3'- -CgGGGGCAUG-UGGCGaCgCGgCCGau -5'
6358 3' -63 NC_001847.1 + 8130 0.66 0.53726
Target:  5'- gGCCCCaggGgcggGCGgUGCUGCGCgagGGCUAg -3'
miRNA:   3'- -CGGGGg--Ca---UGUgGCGACGCGg--CCGAU- -5'
6358 3' -63 NC_001847.1 + 9059 0.78 0.104891
Target:  5'- cCCCCCGUGCAgCGCuccauUGCaGCCGGCUc -3'
miRNA:   3'- cGGGGGCAUGUgGCG-----ACG-CGGCCGAu -5'
6358 3' -63 NC_001847.1 + 9605 0.67 0.490077
Target:  5'- aGCCgcggggacgaCCGUAgcugcgccCGCCGCcGCGCCGGCc- -3'
miRNA:   3'- -CGGg---------GGCAU--------GUGGCGaCGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.