miRNA display CGI


Results 21 - 40 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 82607 0.73 0.220114
Target:  5'- gGCgCCUGUGCGCCGC-GCGCUGGa-- -3'
miRNA:   3'- -CGgGGGCAUGUGGCGaCGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 131246 0.73 0.209879
Target:  5'- cGCCCgCGcuggcUACGCCGCgGCGCCGcGCg- -3'
miRNA:   3'- -CGGGgGC-----AUGUGGCGaCGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 126667 0.74 0.177239
Target:  5'- cGCCCCCGgccgaGCGCCGCccccgGC-CCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGCGa----CGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 107707 0.76 0.126504
Target:  5'- gGCCCCCGcgccgcugcgaacgACACCGaCcGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCa-------------UGUGGC-GaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 14080 0.72 0.26537
Target:  5'- gGCCgCUCGUggACAUCGCggagGCGCUGGCg- -3'
miRNA:   3'- -CGG-GGGCA--UGUGGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 3195 0.72 0.236262
Target:  5'- cGCCgCCGU-CGCCGCcauCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCAuGUGGCGac-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 133066 0.73 0.20689
Target:  5'- gGCCCCgCGgggcgcucgccgcCACCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGGG-GCau-----------GUGGCGACGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 120994 0.77 0.122121
Target:  5'- -gCCCCGgcCGCCGCUGCgcaGCCGGCc- -3'
miRNA:   3'- cgGGGGCauGUGGCGACG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 131206 0.73 0.22539
Target:  5'- cGCCCCCcc-CGCCGCgGCGCCaGCg- -3'
miRNA:   3'- -CGGGGGcauGUGGCGaCGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 111872 0.78 0.104891
Target:  5'- cCCCCCGUGCAgCGCuccauUGCaGCCGGCUc -3'
miRNA:   3'- cGGGGGCAUGUgGCG-----ACG-CGGCCGAu -5'
6358 3' -63 NC_001847.1 + 106526 0.73 0.209879
Target:  5'- gGCCCCgCGgcCGCCGCguaGCGCgCGGCc- -3'
miRNA:   3'- -CGGGG-GCauGUGGCGa--CGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 77148 0.73 0.220114
Target:  5'- cGCCgCCGccUGCGCCGCcaccGCGCCGGUc- -3'
miRNA:   3'- -CGGgGGC--AUGUGGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 102810 0.74 0.195298
Target:  5'- gGCCCCCuccGCGCCGCgccGCGCgGGCc- -3'
miRNA:   3'- -CGGGGGca-UGUGGCGa--CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 64450 0.74 0.186076
Target:  5'- cGCCCCCGc-CGCCGCccGCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCauGUGGCGa-CGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 52269 0.75 0.152934
Target:  5'- uGCUCgCGUGC-CCGC-GCGCCGGCUu -3'
miRNA:   3'- -CGGGgGCAUGuGGCGaCGCGGCCGAu -5'
6358 3' -63 NC_001847.1 + 112974 0.76 0.128105
Target:  5'- cGCCCgagcaggCCG-GC-CCGCUGCGCCGGCUu -3'
miRNA:   3'- -CGGG-------GGCaUGuGGCGACGCGGCCGAu -5'
6358 3' -63 NC_001847.1 + 90823 0.71 0.271529
Target:  5'- aCgCCCGgcggGCACCGCUcugGCGCUGGCc- -3'
miRNA:   3'- cGgGGGCa---UGUGGCGA---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 88819 0.72 0.26537
Target:  5'- gGCCCgcgggcggCCGUGCugCGCUcgGCGCuaCGGCUGg -3'
miRNA:   3'- -CGGG--------GGCAUGugGCGA--CGCG--GCCGAU- -5'
6358 3' -63 NC_001847.1 + 30501 0.72 0.253392
Target:  5'- gGCCCUCGgGCGCgCGCUagacgacaGUGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUG-GCGA--------CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 5791 0.72 0.241862
Target:  5'- aGCCCCgGgcccgGCACCGCgcuUGCGCuUGGCg- -3'
miRNA:   3'- -CGGGGgCa----UGUGGCG---ACGCG-GCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.