miRNA display CGI


Results 21 - 40 of 449 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 132132 0.7 0.310215
Target:  5'- cGCCCCUauuGggcgGCGCUGCUGCcgcgcagggugggGCCGGCg- -3'
miRNA:   3'- -CGGGGG---Ca---UGUGGCGACG-------------CGGCCGau -5'
6358 3' -63 NC_001847.1 + 131995 0.68 0.453764
Target:  5'- gGCCCgCC--GCGCCGCcgGCGCCgccgGGCUc -3'
miRNA:   3'- -CGGG-GGcaUGUGGCGa-CGCGG----CCGAu -5'
6358 3' -63 NC_001847.1 + 131898 0.66 0.566318
Target:  5'- cGCCCCUGc-CGCCgGCgagcacgGCGCgGGCg- -3'
miRNA:   3'- -CGGGGGCauGUGG-CGa------CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 131865 0.73 0.214945
Target:  5'- uGCgCgCCGUGCucgccgGCCGCgcgGCGCCGGCg- -3'
miRNA:   3'- -CGgG-GGCAUG------UGGCGa--CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 131800 0.67 0.471743
Target:  5'- cGCCCCCaugGCcuACCcggagGCcgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGca-UG--UGG-----CGa-CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 131631 0.66 0.556581
Target:  5'- gGCCacggCCCGUACACgaaGCU-CGCgCGGCUc -3'
miRNA:   3'- -CGG----GGGCAUGUGg--CGAcGCG-GCCGAu -5'
6358 3' -63 NC_001847.1 + 131347 0.66 0.566318
Target:  5'- cGCCgCCCG---GCCGCgUGCGCuuCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCG-ACGCG--GCCGau -5'
6358 3' -63 NC_001847.1 + 131246 0.73 0.209879
Target:  5'- cGCCCgCGcuggcUACGCCGCgGCGCCGcGCg- -3'
miRNA:   3'- -CGGGgGC-----AUGUGGCGaCGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 131206 0.73 0.22539
Target:  5'- cGCCCCCcc-CGCCGCgGCGCCaGCg- -3'
miRNA:   3'- -CGGGGGcauGUGGCGaCGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 131176 0.66 0.53726
Target:  5'- gGCCCCCG-GCGCC-CUcGCcGCCGGa-- -3'
miRNA:   3'- -CGGGGGCaUGUGGcGA-CG-CGGCCgau -5'
6358 3' -63 NC_001847.1 + 130721 0.66 0.576098
Target:  5'- uUCCCUGcgGCGCgCGCUGCcgccGUCGGCg- -3'
miRNA:   3'- cGGGGGCa-UGUG-GCGACG----CGGCCGau -5'
6358 3' -63 NC_001847.1 + 130133 0.66 0.527686
Target:  5'- uCCCCUccGCGCCGCcGcCGCCGcGCUu -3'
miRNA:   3'- cGGGGGcaUGUGGCGaC-GCGGC-CGAu -5'
6358 3' -63 NC_001847.1 + 129928 0.69 0.39395
Target:  5'- cGCCCcgCCGgcCGCCGCgGCgagagaGCCGGCg- -3'
miRNA:   3'- -CGGG--GGCauGUGGCGaCG------CGGCCGau -5'
6358 3' -63 NC_001847.1 + 129362 0.66 0.546893
Target:  5'- uGCCgggCCCGgggcuagACGCCGCgcuucGCGuuGGCg- -3'
miRNA:   3'- -CGG---GGGCa------UGUGGCGa----CGCggCCGau -5'
6358 3' -63 NC_001847.1 + 128695 0.66 0.566318
Target:  5'- gGCCa-CGUACGCCGUcgccGCGCCGcCUAa -3'
miRNA:   3'- -CGGggGCAUGUGGCGa---CGCGGCcGAU- -5'
6358 3' -63 NC_001847.1 + 127739 0.69 0.40218
Target:  5'- cCCCCCauaaagGUACAgCaGCUGCGgCGGCUu -3'
miRNA:   3'- cGGGGG------CAUGUgG-CGACGCgGCCGAu -5'
6358 3' -63 NC_001847.1 + 127415 0.66 0.546893
Target:  5'- cGCCUCCGcgcccGCGCC-CUGCGCCugaaugcccaaGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGcGACGCGG-----------CCGau -5'
6358 3' -63 NC_001847.1 + 127025 0.75 0.168778
Target:  5'- cGCCCCUGggGCcCCGCgccUGCGCUGGCg- -3'
miRNA:   3'- -CGGGGGCa-UGuGGCG---ACGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 126667 0.74 0.177239
Target:  5'- cGCCCCCGgccgaGCGCCGCccccgGC-CCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGCGa----CGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 125064 0.69 0.377822
Target:  5'- uGCUCCCGcGCGCgGCgggGCGCUGGg-- -3'
miRNA:   3'- -CGGGGGCaUGUGgCGa--CGCGGCCgau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.