miRNA display CGI


Results 1 - 20 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 135088 0.73 0.209879
Target:  5'- cGCCCCCGccCGCCGCaaugcacGCGCCGcGCg- -3'
miRNA:   3'- -CGGGGGCauGUGGCGa------CGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 134937 0.67 0.480868
Target:  5'- gGCCCCCGgGCGCCGgggGCGggGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUGGCga-CGCggCCGau -5'
6358 3' -63 NC_001847.1 + 134895 0.69 0.362144
Target:  5'- gGCCCCUGgGCGCCGg-GCGUCGGg-- -3'
miRNA:   3'- -CGGGGGCaUGUGGCgaCGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 134697 0.66 0.556581
Target:  5'- cGCCgCCGc-CGCCGCUGCuGCCGccGCc- -3'
miRNA:   3'- -CGGgGGCauGUGGCGACG-CGGC--CGau -5'
6358 3' -63 NC_001847.1 + 134206 0.69 0.377822
Target:  5'- cGUCCCCGgGCGCgGgCUcgggcuucccgGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGCaUGUGgC-GA-----------CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 134050 0.7 0.354476
Target:  5'- cGCCgCCCGcg-GCCGCgGCGCcCGGCg- -3'
miRNA:   3'- -CGG-GGGCaugUGGCGaCGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 133922 0.66 0.576098
Target:  5'- gGCCUgCGggcgGCGCgCGCUGgaGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUG-GCGACg-CGGCCGau -5'
6358 3' -63 NC_001847.1 + 133890 0.69 0.40218
Target:  5'- gGgCUCgGcGCGCCGCUGCGgCCGGUg- -3'
miRNA:   3'- -CgGGGgCaUGUGGCGACGC-GGCCGau -5'
6358 3' -63 NC_001847.1 + 133739 0.67 0.490077
Target:  5'- gGUgCCCGUGcCGCCGC-GCGaguaCCGGCa- -3'
miRNA:   3'- -CGgGGGCAU-GUGGCGaCGC----GGCCGau -5'
6358 3' -63 NC_001847.1 + 133535 0.68 0.427512
Target:  5'- uGCCgCggcgcaGUGCGCCGC-GCGCUGGCc- -3'
miRNA:   3'- -CGGgGg-----CAUGUGGCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 133195 0.82 0.053524
Target:  5'- uGCCCUCGcuggaggagcucUGCGCCGC-GCGCCGGCUAa -3'
miRNA:   3'- -CGGGGGC------------AUGUGGCGaCGCGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 133066 0.73 0.20689
Target:  5'- gGCCCCgCGgggcgcucgccgcCACCGCUGCGgCGGCg- -3'
miRNA:   3'- -CGGGG-GCau-----------GUGGCGACGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 132958 0.7 0.332166
Target:  5'- uGCgCCCGcACGCCGCccaggcgGCGCgGGCg- -3'
miRNA:   3'- -CGgGGGCaUGUGGCGa------CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 132914 0.75 0.156764
Target:  5'- cGCCCgCGcccaGCGCCGCgGCGCUGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGUGGCGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 132786 0.68 0.410518
Target:  5'- cGCCgCCG-ACGCgGCcGgGCCGGCg- -3'
miRNA:   3'- -CGGgGGCaUGUGgCGaCgCGGCCGau -5'
6358 3' -63 NC_001847.1 + 132736 0.66 0.543998
Target:  5'- gGCCCCuCGggggaggacgacucUGgGCCGagGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-GC--------------AUgUGGCgaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 132555 0.66 0.566318
Target:  5'- gGCUCgCGUGCgGCCGCgGCGgCCGcGCa- -3'
miRNA:   3'- -CGGGgGCAUG-UGGCGaCGC-GGC-CGau -5'
6358 3' -63 NC_001847.1 + 132491 0.66 0.566318
Target:  5'- aGCCgCCGggcgaagGCGCCGCaagcgGCGaCGGCg- -3'
miRNA:   3'- -CGGgGGCa------UGUGGCGa----CGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 132373 0.7 0.332166
Target:  5'- gGCCgCCGgcggggGCGCCG--GCGCCGGCg- -3'
miRNA:   3'- -CGGgGGCa-----UGUGGCgaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 132175 0.69 0.377822
Target:  5'- gGCCCCgGcgGCGCUGC-GCGCCgaGGCg- -3'
miRNA:   3'- -CGGGGgCa-UGUGGCGaCGCGG--CCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.