miRNA display CGI


Results 41 - 60 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 14140 0.66 0.556581
Target:  5'- uGUCUCCGgccgGCugCGCaGCGgCGGCc- -3'
miRNA:   3'- -CGGGGGCa---UGugGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 33679 0.66 0.556581
Target:  5'- cGCCgCCCuUGCgGCCGC-GCGgCGGCa- -3'
miRNA:   3'- -CGG-GGGcAUG-UGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 131631 0.66 0.556581
Target:  5'- gGCCacggCCCGUACACgaaGCU-CGCgCGGCUc -3'
miRNA:   3'- -CGG----GGGCAUGUGg--CGAcGCG-GCCGAu -5'
6358 3' -63 NC_001847.1 + 31884 0.66 0.556581
Target:  5'- cGCCgCCGc-CGCCGCUGCuGCCGccGCc- -3'
miRNA:   3'- -CGGgGGCauGUGGCGACG-CGGC--CGau -5'
6358 3' -63 NC_001847.1 + 95536 0.66 0.556581
Target:  5'- uGCCCCUGgggcuggggccGCGCCGCagcaGCGCUGGg-- -3'
miRNA:   3'- -CGGGGGCa----------UGUGGCGa---CGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 10045 0.66 0.556581
Target:  5'- cGCgUUCGUcacggccgacacGCGCgCGCUGCGCCGcGCg- -3'
miRNA:   3'- -CGgGGGCA------------UGUG-GCGACGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 118205 0.66 0.55561
Target:  5'- -gCCCCGUcgcGCACUGagcagaccggcguCUGCGCCGaGCg- -3'
miRNA:   3'- cgGGGGCA---UGUGGC-------------GACGCGGC-CGau -5'
6358 3' -63 NC_001847.1 + 105930 0.66 0.546893
Target:  5'- gGCCCgCCGcggccgagaGCACCgggagcccgGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCa--------UGUGG---------CGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 56790 0.66 0.546893
Target:  5'- cGCCCgCCGUuCGUCGCgcucacgGgGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCAuGUGGCGa------CgCGGCCGau -5'
6358 3' -63 NC_001847.1 + 38502 0.66 0.546893
Target:  5'- nCCCCCGcGCACgaCGCguaccCGCCGGCc- -3'
miRNA:   3'- cGGGGGCaUGUG--GCGac---GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 115732 0.66 0.546893
Target:  5'- cGCUCCCGcuuUGC-CUGCUGCGUCGccGCg- -3'
miRNA:   3'- -CGGGGGC---AUGuGGCGACGCGGC--CGau -5'
6358 3' -63 NC_001847.1 + 56473 0.66 0.546893
Target:  5'- cGCCCgCGUGCGCaCGCcgGCGacgcaGGCg- -3'
miRNA:   3'- -CGGGgGCAUGUG-GCGa-CGCgg---CCGau -5'
6358 3' -63 NC_001847.1 + 68932 0.66 0.546893
Target:  5'- cGCgCCCGagcCGCCGCUGgG-CGGCg- -3'
miRNA:   3'- -CGgGGGCau-GUGGCGACgCgGCCGau -5'
6358 3' -63 NC_001847.1 + 61369 0.66 0.546893
Target:  5'- cGCCCCgcgcuCGUagcggcccGCGCCGCcGC-CCGGCg- -3'
miRNA:   3'- -CGGGG-----GCA--------UGUGGCGaCGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 29915 0.66 0.546893
Target:  5'- cGCCCgCCuGUGC-CCGC-GCGCCcGCg- -3'
miRNA:   3'- -CGGG-GG-CAUGuGGCGaCGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 61113 0.66 0.546893
Target:  5'- aGCgCCaCGUcCGCCaGCggcacGCGCCGGCg- -3'
miRNA:   3'- -CGgGG-GCAuGUGG-CGa----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 58274 0.66 0.546893
Target:  5'- gGCCUCCauGUGCucgGCCGCgGCGaCGGCg- -3'
miRNA:   3'- -CGGGGG--CAUG---UGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 60975 0.66 0.546893
Target:  5'- cGUCCCCGcUGCGCgCGCccacgGCGCCGuCg- -3'
miRNA:   3'- -CGGGGGC-AUGUG-GCGa----CGCGGCcGau -5'
6358 3' -63 NC_001847.1 + 62368 0.66 0.546893
Target:  5'- -gCCCCGUGCGCaGCUggugcgucaGCGCCaGCg- -3'
miRNA:   3'- cgGGGGCAUGUGgCGA---------CGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 127415 0.66 0.546893
Target:  5'- cGCCUCCGcgcccGCGCC-CUGCGCCugaaugcccaaGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGcGACGCGG-----------CCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.