miRNA display CGI


Results 61 - 80 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 43263 0.66 0.546893
Target:  5'- uUCUCUGUGCugCGCguccgGCGCuuCGGCUu -3'
miRNA:   3'- cGGGGGCAUGugGCGa----CGCG--GCCGAu -5'
6358 3' -63 NC_001847.1 + 3117 0.66 0.546893
Target:  5'- gGCCCgCCGcggccgagaGCACCgggagcccgGCgGCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGCa--------UGUGG---------CGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 49924 0.66 0.546893
Target:  5'- cGCCUUCGUcgggcucuuuuGCACCGCcgggcUGC-CCGGCg- -3'
miRNA:   3'- -CGGGGGCA-----------UGUGGCG-----ACGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 58274 0.66 0.546893
Target:  5'- gGCCUCCauGUGCucgGCCGCgGCGaCGGCg- -3'
miRNA:   3'- -CGGGGG--CAUG---UGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 58849 0.66 0.546893
Target:  5'- uGCCCgCG-GCGCUGCguccgcGCGCCaGGCa- -3'
miRNA:   3'- -CGGGgGCaUGUGGCGa-----CGCGG-CCGau -5'
6358 3' -63 NC_001847.1 + 62368 0.66 0.546893
Target:  5'- -gCCCCGUGCGCaGCUggugcgucaGCGCCaGCg- -3'
miRNA:   3'- cgGGGGCAUGUGgCGA---------CGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 51490 0.66 0.545928
Target:  5'- cGCCagucaaaCUCGgagcaGCGCCGCgccggugcgGCGCCGGCa- -3'
miRNA:   3'- -CGG-------GGGCa----UGUGGCGa--------CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 106352 0.66 0.544962
Target:  5'- uGgCCCCGgcagcccugcacGCGCCGCUGCaGCaGGCg- -3'
miRNA:   3'- -CgGGGGCa-----------UGUGGCGACG-CGgCCGau -5'
6358 3' -63 NC_001847.1 + 3539 0.66 0.544962
Target:  5'- uGgCCCCGgcagcccugcacGCGCCGCUGCaGCaGGCg- -3'
miRNA:   3'- -CgGGGGCa-----------UGUGGCGACG-CGgCCGau -5'
6358 3' -63 NC_001847.1 + 16871 0.66 0.543998
Target:  5'- gGCUCCUGgagagacaucaccacCACCGCUGCgucGCCGGUc- -3'
miRNA:   3'- -CGGGGGCau-------------GUGGCGACG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 132736 0.66 0.543998
Target:  5'- gGCCCCuCGggggaggacgacucUGgGCCGagGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-GC--------------AUgUGGCgaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 96509 0.66 0.543998
Target:  5'- -gUCCCGUucgacgagugggcgGCaacggACCGCgcGCGCCGGCUGu -3'
miRNA:   3'- cgGGGGCA--------------UG-----UGGCGa-CGCGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 55642 0.66 0.543998
Target:  5'- aGCCCCgacaacagcacagaCGUgcGCGCCGC-GCuCCGGCUc -3'
miRNA:   3'- -CGGGG--------------GCA--UGUGGCGaCGcGGCCGAu -5'
6358 3' -63 NC_001847.1 + 60113 0.66 0.53726
Target:  5'- cGCCCaCCGacggcgccuucUGC-CCGCUGgccccccgccCGCCGGCg- -3'
miRNA:   3'- -CGGG-GGC-----------AUGuGGCGAC----------GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 115967 0.66 0.53726
Target:  5'- cGCCCCCGccg--UGCUGCGCgGGgUAa -3'
miRNA:   3'- -CGGGGGCaugugGCGACGCGgCCgAU- -5'
6358 3' -63 NC_001847.1 + 97607 0.66 0.53726
Target:  5'- gGCCgCCCGUcgcguGCACCGUcgagggUGCGuCCaGGCg- -3'
miRNA:   3'- -CGG-GGGCA-----UGUGGCG------ACGC-GG-CCGau -5'
6358 3' -63 NC_001847.1 + 131176 0.66 0.53726
Target:  5'- gGCCCCCG-GCGCC-CUcGCcGCCGGa-- -3'
miRNA:   3'- -CGGGGGCaUGUGGcGA-CG-CGGCCgau -5'
6358 3' -63 NC_001847.1 + 28363 0.66 0.53726
Target:  5'- gGCCCCCG-GCGCC-CUcGCcGCCGGa-- -3'
miRNA:   3'- -CGGGGGCaUGUGGcGA-CG-CGGCCgau -5'
6358 3' -63 NC_001847.1 + 73585 0.66 0.53726
Target:  5'- uGCaCCUCGcGCACCGUgccGuUGCCGGCg- -3'
miRNA:   3'- -CG-GGGGCaUGUGGCGa--C-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 95309 0.66 0.53726
Target:  5'- cGCCUCCa---GgCGCgGCGCCGGCa- -3'
miRNA:   3'- -CGGGGGcaugUgGCGaCGCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.