miRNA display CGI


Results 81 - 100 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 43421 0.66 0.53726
Target:  5'- -aCCUCGcGCuGCUGCUGCugGCCGGCg- -3'
miRNA:   3'- cgGGGGCaUG-UGGCGACG--CGGCCGau -5'
6358 3' -63 NC_001847.1 + 123810 0.66 0.53726
Target:  5'- uGCUCCCGcuccgGCGCCaGCcGCccGCCGGCc- -3'
miRNA:   3'- -CGGGGGCa----UGUGG-CGaCG--CGGCCGau -5'
6358 3' -63 NC_001847.1 + 131176 0.66 0.53726
Target:  5'- gGCCCCCG-GCGCC-CUcGCcGCCGGa-- -3'
miRNA:   3'- -CGGGGGCaUGUGGcGA-CG-CGGCCgau -5'
6358 3' -63 NC_001847.1 + 115967 0.66 0.53726
Target:  5'- cGCCCCCGccg--UGCUGCGCgGGgUAa -3'
miRNA:   3'- -CGGGGGCaugugGCGACGCGgCCgAU- -5'
6358 3' -63 NC_001847.1 + 97607 0.66 0.53726
Target:  5'- gGCCgCCCGUcgcguGCACCGUcgagggUGCGuCCaGGCg- -3'
miRNA:   3'- -CGG-GGGCA-----UGUGGCG------ACGC-GG-CCGau -5'
6358 3' -63 NC_001847.1 + 73585 0.66 0.53726
Target:  5'- uGCaCCUCGcGCACCGUgccGuUGCCGGCg- -3'
miRNA:   3'- -CG-GGGGCaUGUGGCGa--C-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 89085 0.66 0.53726
Target:  5'- uGCCCaCCGggagUACCGCgUGCGCacagaaGGCa- -3'
miRNA:   3'- -CGGG-GGCau--GUGGCG-ACGCGg-----CCGau -5'
6358 3' -63 NC_001847.1 + 29924 0.66 0.5363
Target:  5'- gGCCCCuCGggggaggagacucUGgGCCGagGCGCCGGCg- -3'
miRNA:   3'- -CGGGG-GC-------------AUgUGGCgaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 67521 0.66 0.53534
Target:  5'- cGUCUCCGccgGCGCCGCcuuuuuccgcagGCGCgGGCg- -3'
miRNA:   3'- -CGGGGGCa--UGUGGCGa-----------CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 99186 0.66 0.534381
Target:  5'- cGCCCUCGUgguccucgcgcgagGCgGCCGC-GCGgCGGCg- -3'
miRNA:   3'- -CGGGGGCA--------------UG-UGGCGaCGCgGCCGau -5'
6358 3' -63 NC_001847.1 + 61179 0.66 0.531508
Target:  5'- gGUCCUCGgcgaggaaaagguuuUGCGCgCGCgccagguacGCGCCGGCUGc -3'
miRNA:   3'- -CGGGGGC---------------AUGUG-GCGa--------CGCGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 103637 0.66 0.531508
Target:  5'- cGCUCCCaugcgggucgaagagGUAgACCGC-GuCGCCGGCg- -3'
miRNA:   3'- -CGGGGG---------------CAUgUGGCGaC-GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 12615 0.66 0.528641
Target:  5'- gGCCCCCGcuccucaacauggagGCgGCCGCUGCGgCuGCg- -3'
miRNA:   3'- -CGGGGGCa--------------UG-UGGCGACGCgGcCGau -5'
6358 3' -63 NC_001847.1 + 47891 0.66 0.527686
Target:  5'- cGCgCCCGcGCGCCGggGCgcaGCCGGUa- -3'
miRNA:   3'- -CGgGGGCaUGUGGCgaCG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 33523 0.66 0.527686
Target:  5'- cGCCgCCGcggagGCGCCGg-GCGCgGGCg- -3'
miRNA:   3'- -CGGgGGCa----UGUGGCgaCGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 41498 0.66 0.527686
Target:  5'- cGCUCCaugaccgagCGUGCAgacguCCGCggccGCGCCGGCc- -3'
miRNA:   3'- -CGGGG---------GCAUGU-----GGCGa---CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 115134 0.66 0.527686
Target:  5'- cGCCCUauuggaaGUGCGCUGCUcuggcgggGCGCCugacuuucGGCUGg -3'
miRNA:   3'- -CGGGGg------CAUGUGGCGA--------CGCGG--------CCGAU- -5'
6358 3' -63 NC_001847.1 + 36183 0.66 0.527686
Target:  5'- -aCCCC-UACGCCGUggcGCGUgGGCUc -3'
miRNA:   3'- cgGGGGcAUGUGGCGa--CGCGgCCGAu -5'
6358 3' -63 NC_001847.1 + 27320 0.66 0.527686
Target:  5'- uCCCCUccGCGCCGCcGcCGCCGcGCUu -3'
miRNA:   3'- cGGGGGcaUGUGGCGaC-GCGGC-CGAu -5'
6358 3' -63 NC_001847.1 + 34076 0.66 0.527686
Target:  5'- gGCCCCCGcgGCgGCCcCgGgGCCGGCc- -3'
miRNA:   3'- -CGGGGGCa-UG-UGGcGaCgCGGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.