miRNA display CGI


Results 61 - 80 of 449 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 3' -63 NC_001847.1 + 16264 0.73 0.204917
Target:  5'- cGgCCCCGUGCACCGa-GCGcCCGGgUAa -3'
miRNA:   3'- -CgGGGGCAUGUGGCgaCGC-GGCCgAU- -5'
6358 3' -63 NC_001847.1 + 16871 0.66 0.543998
Target:  5'- gGCUCCUGgagagacaucaccacCACCGCUGCgucGCCGGUc- -3'
miRNA:   3'- -CGGGGGCau-------------GUGGCGACG---CGGCCGau -5'
6358 3' -63 NC_001847.1 + 18448 0.66 0.518176
Target:  5'- gGCCagCCGUGCgguGCCGCgcccgcaGCGCCGGa-- -3'
miRNA:   3'- -CGGg-GGCAUG---UGGCGa------CGCGGCCgau -5'
6358 3' -63 NC_001847.1 + 18537 0.66 0.570225
Target:  5'- cGCCgCCGUccgcgccgcagagcgGCAgCGCUGCGCCcagaGCg- -3'
miRNA:   3'- -CGGgGGCA---------------UGUgGCGACGCGGc---CGau -5'
6358 3' -63 NC_001847.1 + 18585 0.69 0.373071
Target:  5'- uGCCCaCGUGCGCCauuagcgcgccguccGCgGCGUCGGCg- -3'
miRNA:   3'- -CGGGgGCAUGUGG---------------CGaCGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 18700 0.68 0.453764
Target:  5'- gGCCCgCGUcaccgccaGCGCCGCggggaGCGCCaGCg- -3'
miRNA:   3'- -CGGGgGCA--------UGUGGCGa----CGCGGcCGau -5'
6358 3' -63 NC_001847.1 + 19848 0.71 0.297316
Target:  5'- cGCCCuuG-GC-CCGCgcccggggGCGCCGGCUu -3'
miRNA:   3'- -CGGGggCaUGuGGCGa-------CGCGGCCGAu -5'
6358 3' -63 NC_001847.1 + 19849 0.67 0.466311
Target:  5'- aGCCCCUccgGCGCCGCUGUggacacgcucaucauGgCGGCg- -3'
miRNA:   3'- -CGGGGGca-UGUGGCGACG---------------CgGCCGau -5'
6358 3' -63 NC_001847.1 + 20033 0.68 0.427512
Target:  5'- gGCCCUgCGgcCGCCGCccuggGCGCgGGCa- -3'
miRNA:   3'- -CGGGG-GCauGUGGCGa----CGCGgCCGau -5'
6358 3' -63 NC_001847.1 + 20111 0.68 0.418962
Target:  5'- uGCCCCgGacuCGCCGCccucaugGCGCgCGGCg- -3'
miRNA:   3'- -CGGGGgCau-GUGGCGa------CGCG-GCCGau -5'
6358 3' -63 NC_001847.1 + 20250 0.7 0.317875
Target:  5'- cGCCCCCGcgcgcgccaugUGCuauccuuuaaagGCCGCacccaGCGCCGGCg- -3'
miRNA:   3'- -CGGGGGC-----------AUG------------UGGCGa----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 20980 0.68 0.444915
Target:  5'- cGCCCagugagCGcGCGCCGCUGCauGCUGGUg- -3'
miRNA:   3'- -CGGGg-----GCaUGUGGCGACG--CGGCCGau -5'
6358 3' -63 NC_001847.1 + 20993 0.68 0.427512
Target:  5'- gGCCUCCcaaucgGCACCGC-GCGC-GGCUGu -3'
miRNA:   3'- -CGGGGGca----UGUGGCGaCGCGgCCGAU- -5'
6358 3' -63 NC_001847.1 + 21739 0.67 0.462708
Target:  5'- cCCCCCGacgcUACgcuGCCGCgacGUGCUGGCg- -3'
miRNA:   3'- cGGGGGC----AUG---UGGCGa--CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 21766 0.69 0.377822
Target:  5'- gGCCgCCG-GCGCCGggcccgGCGCCGGCc- -3'
miRNA:   3'- -CGGgGGCaUGUGGCga----CGCGGCCGau -5'
6358 3' -63 NC_001847.1 + 21958 0.66 0.53726
Target:  5'- cGUCCgggCGcUGgGCCGCgGCGCCGGUUGc -3'
miRNA:   3'- -CGGGg--GC-AUgUGGCGaCGCGGCCGAU- -5'
6358 3' -63 NC_001847.1 + 21989 0.66 0.518176
Target:  5'- cGCCCgCGgucgACGacCCGCUGaaaacuacgaCGCCGGCg- -3'
miRNA:   3'- -CGGGgGCa---UGU--GGCGAC----------GCGGCCGau -5'
6358 3' -63 NC_001847.1 + 22083 0.67 0.508735
Target:  5'- uGCgCagaCGUGCGCCgacgcgcugcgGCUGCuGCCGGCg- -3'
miRNA:   3'- -CGgGg--GCAUGUGG-----------CGACG-CGGCCGau -5'
6358 3' -63 NC_001847.1 + 23854 0.74 0.177239
Target:  5'- cGCCCCCGgccgaGCGCCGCccccgGC-CCGGCg- -3'
miRNA:   3'- -CGGGGGCa----UGUGGCGa----CGcGGCCGau -5'
6358 3' -63 NC_001847.1 + 27071 0.68 0.453764
Target:  5'- cCCCCCGggcgGCACCGCgcccaCGCUGGa-- -3'
miRNA:   3'- cGGGGGCa---UGUGGCGac---GCGGCCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.