miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 5' -57.1 NC_001847.1 + 91882 0.66 0.805241
Target:  5'- cGCAGCAGGUgcccccCGGGCgccgcgccGCCCGc--- -3'
miRNA:   3'- uCGUCGUCCAa-----GUCCGa-------CGGGUaguc -5'
6358 5' -57.1 NC_001847.1 + 97044 0.67 0.767856
Target:  5'- gGGCAGCGGcGUcCGGGCUGCUUu---- -3'
miRNA:   3'- -UCGUCGUC-CAaGUCCGACGGGuaguc -5'
6358 5' -57.1 NC_001847.1 + 97956 0.66 0.814203
Target:  5'- cAGCGGCgAGGggu-GGCUGUaCGUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaaguCCGACGgGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 99554 0.73 0.400053
Target:  5'- cGCAGCAGGUUCuugAGGUUGgCCAgccCGGc -3'
miRNA:   3'- uCGUCGUCCAAG---UCCGACgGGUa--GUC- -5'
6358 5' -57.1 NC_001847.1 + 102449 0.67 0.748371
Target:  5'- cAGCgGGCAGG-UCGGGC-GCCCcucCAGc -3'
miRNA:   3'- -UCG-UCGUCCaAGUCCGaCGGGua-GUC- -5'
6358 5' -57.1 NC_001847.1 + 105106 0.66 0.814203
Target:  5'- cGGCGGCGGGgccgcCGGGCggcauggGCCCcagcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa------CGGGua-----GUC- -5'
6358 5' -57.1 NC_001847.1 + 106672 0.7 0.562984
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 106791 0.66 0.796117
Target:  5'- cAGCAGCGGGcggaugaCGGccgcGCUGCCCGcCGGc -3'
miRNA:   3'- -UCGUCGUCCaa-----GUC----CGACGGGUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 109263 0.68 0.67734
Target:  5'- gGGuCGGCAGGggCGGGCUGCaagCGagGGg -3'
miRNA:   3'- -UC-GUCGUCCaaGUCCGACGg--GUagUC- -5'
6358 5' -57.1 NC_001847.1 + 119112 0.69 0.625246
Target:  5'- gGGCGGCGGGg-CAGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 119172 0.67 0.718371
Target:  5'- gGGCGGCGGGg-CAGGCaUGggaCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCG-ACg--GGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 119232 0.69 0.625246
Target:  5'- gGGCGGCGGGg-CAGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 120070 0.66 0.814203
Target:  5'- uGCcGCAGGcgaucccCGGGCcGCCgGUCAGa -3'
miRNA:   3'- uCGuCGUCCaa-----GUCCGaCGGgUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 121000 0.7 0.573277
Target:  5'- uAGCGGCcgcccAGGcgCGGGCcccGCCCAUCGc -3'
miRNA:   3'- -UCGUCG-----UCCaaGUCCGa--CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 121374 1.08 0.001903
Target:  5'- cAGCAGCAGGUUCAGGCUGCCCAUCAGc -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGACGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 123177 0.75 0.311947
Target:  5'- cGCGGCGGcGcUCAGGCcGCCCAUCc- -3'
miRNA:   3'- uCGUCGUC-CaAGUCCGaCGGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 123396 0.7 0.583613
Target:  5'- cAGCAGCuGGUUgAGGCgGUCCccCAGc -3'
miRNA:   3'- -UCGUCGuCCAAgUCCGaCGGGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 125295 0.67 0.767856
Target:  5'- cGCAGguGGggCaAGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaG-UCCGACgGGUAguc -5'
6358 5' -57.1 NC_001847.1 + 127353 0.7 0.573277
Target:  5'- cGCGGCAGGggC-GGCgggGCCCGagccUCGGc -3'
miRNA:   3'- uCGUCGUCCaaGuCCGa--CGGGU----AGUC- -5'
6358 5' -57.1 NC_001847.1 + 129204 0.66 0.775514
Target:  5'- aAGCAGCGGG--CGGGCccgucguccgccGCCCAUCc- -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa-----------CGGGUAGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.