miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 5' -57.1 NC_001847.1 + 26391 0.66 0.775514
Target:  5'- aAGCAGCGGG--CGGGCccgucguccgccGCCCAUCc- -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa-----------CGGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 27792 0.68 0.69797
Target:  5'- cGCGGCGGGUgCGGGCucUGgCCAUUc- -3'
miRNA:   3'- uCGUCGUCCAaGUCCG--ACgGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 39423 0.73 0.417693
Target:  5'- aAGCAGCgAGGggggcgcgUGGGCguaGCCCAUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaa------GUCCGa--CGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 45662 0.68 0.67734
Target:  5'- uGCGGC-GGUUCAGGCUugcgacggcgGCgCCGUCc- -3'
miRNA:   3'- uCGUCGuCCAAGUCCGA----------CG-GGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 46983 0.71 0.506448
Target:  5'- cGCAGCAGGca-GGugaauacgcgaaucuGCUGCCCGUCAa -3'
miRNA:   3'- uCGUCGUCCaagUC---------------CGACGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 47549 0.69 0.604386
Target:  5'- cAGCacGGCGGGcgCGGGgaGCCCggCGGc -3'
miRNA:   3'- -UCG--UCGUCCaaGUCCgaCGGGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 48950 0.66 0.805241
Target:  5'- cAGCAGCcgccGGU--AGGCcgcGCCCGUCAu -3'
miRNA:   3'- -UCGUCGu---CCAagUCCGa--CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 53034 0.71 0.532433
Target:  5'- gGGCGGCAGGcgcaaacgCAGGC-GCCCuccggcgacggcGUCAGa -3'
miRNA:   3'- -UCGUCGUCCaa------GUCCGaCGGG------------UAGUC- -5'
6358 5' -57.1 NC_001847.1 + 58677 0.66 0.814203
Target:  5'- cGGUugGGCGGGcggCAGGCUGgCCAUg-- -3'
miRNA:   3'- -UCG--UCGUCCaa-GUCCGACgGGUAguc -5'
6358 5' -57.1 NC_001847.1 + 62900 0.72 0.435799
Target:  5'- uGCAGCGGGUggcgCGGGUgcucgggGCCCG-CGGg -3'
miRNA:   3'- uCGUCGUCCAa---GUCCGa------CGGGUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 64020 0.73 0.408813
Target:  5'- gGGCGGCGGGa-CGGGCuUGCCCG-CGGu -3'
miRNA:   3'- -UCGUCGUCCaaGUCCG-ACGGGUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 64195 0.69 0.633599
Target:  5'- cGCGGCGGGaacaugcgcgggUCGGGgUGCCCGggCGGc -3'
miRNA:   3'- uCGUCGUCCa-----------AGUCCgACGGGUa-GUC- -5'
6358 5' -57.1 NC_001847.1 + 68934 0.66 0.822992
Target:  5'- cGCGGCGGccgCGGGCUGCgCCuccagcCAGg -3'
miRNA:   3'- uCGUCGUCcaaGUCCGACG-GGua----GUC- -5'
6358 5' -57.1 NC_001847.1 + 70253 0.66 0.805241
Target:  5'- gGGCGGCGGGcgcgCGGcGUUGCUC-UCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUC-CGACGGGuAGUC- -5'
6358 5' -57.1 NC_001847.1 + 72724 0.67 0.748371
Target:  5'- cGGCAGCAGGcacgCGGGCaacaGCgCCggCGGg -3'
miRNA:   3'- -UCGUCGUCCaa--GUCCGa---CG-GGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 75015 0.66 0.805241
Target:  5'- gGGCGGgGGGccagCGGGCagaagGCgCCGUCGGu -3'
miRNA:   3'- -UCGUCgUCCaa--GUCCGa----CG-GGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 79647 0.66 0.777415
Target:  5'- cAGCAGCAGGgccCAcGUcGCCCAUagCAGg -3'
miRNA:   3'- -UCGUCGUCCaa-GUcCGaCGGGUA--GUC- -5'
6358 5' -57.1 NC_001847.1 + 81822 0.66 0.796117
Target:  5'- uGCGGCGuGGUcCAGGCgagGUCCAgcgcguacgUCAGc -3'
miRNA:   3'- uCGUCGU-CCAaGUCCGa--CGGGU---------AGUC- -5'
6358 5' -57.1 NC_001847.1 + 85882 0.66 0.786838
Target:  5'- gAGCAGCgcgagcuugucgAGGUcCAGGCgaGCCgCGUCGc -3'
miRNA:   3'- -UCGUCG------------UCCAaGUCCGa-CGG-GUAGUc -5'
6358 5' -57.1 NC_001847.1 + 88395 0.71 0.512398
Target:  5'- cGCGGCGGG--CGGGC-GCgCCGUCGGg -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCG-GGUAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.