Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6358 | 5' | -57.1 | NC_001847.1 | + | 2293 | 0.66 | 0.814203 |
Target: 5'- cGGCGGCGGGgccgcCGGGCggcauggGCCCcagcacgCGGg -3' miRNA: 3'- -UCGUCGUCCaa---GUCCGa------CGGGua-----GUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 3417 | 0.67 | 0.738464 |
Target: 5'- gAGCAGCccgGGGgcgcCAGGCgcaGCCCAggGGg -3' miRNA: 3'- -UCGUCG---UCCaa--GUCCGa--CGGGUagUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 3859 | 0.7 | 0.562984 |
Target: 5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3' miRNA: 3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 3970 | 0.67 | 0.738464 |
Target: 5'- cGGCGGCgagggcgccgGGGgcCGGGCgcgcgGCCCcgCGGg -3' miRNA: 3'- -UCGUCG----------UCCaaGUCCGa----CGGGuaGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 5723 | 0.71 | 0.532433 |
Target: 5'- cGCAGCAGG--CGGGC-GUCgCAUCAGg -3' miRNA: 3'- uCGUCGUCCaaGUCCGaCGG-GUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 8293 | 0.69 | 0.636732 |
Target: 5'- aAGCGGCAGGgcuccccggggggcCAGGCUGUCgG-CAGg -3' miRNA: 3'- -UCGUCGUCCaa------------GUCCGACGGgUaGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 10867 | 0.77 | 0.233528 |
Target: 5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3' miRNA: 3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 13940 | 0.69 | 0.656554 |
Target: 5'- cGCGGCAGGg--GGGCcGCCCcgCGc -3' miRNA: 3'- uCGUCGUCCaagUCCGaCGGGuaGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 14200 | 0.66 | 0.786838 |
Target: 5'- uGGCGGCGGGgcuggcggUCAGGCcgGCCgGgggCGu -3' miRNA: 3'- -UCGUCGUCCa-------AGUCCGa-CGGgUa--GUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 16843 | 0.66 | 0.777415 |
Target: 5'- cAGUGGC-GGUgCAGGUguagucgacggGCCCGUCGGu -3' miRNA: 3'- -UCGUCGuCCAaGUCCGa----------CGGGUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 16971 | 0.67 | 0.728461 |
Target: 5'- gGGCGGCAGaUUgAGGg-GCaCCGUCAGg -3' miRNA: 3'- -UCGUCGUCcAAgUCCgaCG-GGUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 17783 | 0.67 | 0.718371 |
Target: 5'- aGGCcGCuAGGUUCAGGacggGCCCcagCGGg -3' miRNA: 3'- -UCGuCG-UCCAAGUCCga--CGGGua-GUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 18200 | 0.68 | 0.666962 |
Target: 5'- cGCGGCgAGGUcUCGGGCUGgCgGUCu- -3' miRNA: 3'- uCGUCG-UCCA-AGUCCGACgGgUAGuc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 18209 | 0.67 | 0.758171 |
Target: 5'- aGGCAGC-GGUaCGGGCUGUgCGgcucUCGGc -3' miRNA: 3'- -UCGUCGuCCAaGUCCGACGgGU----AGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 21367 | 0.71 | 0.502497 |
Target: 5'- cGGCGGCucGGGccgccUCGGGCgGCUCGUCAGc -3' miRNA: 3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 22482 | 0.67 | 0.767856 |
Target: 5'- cGCAGguGGggCaAGGCUGgCCGUg-- -3' miRNA: 3'- uCGUCguCCaaG-UCCGACgGGUAguc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 23899 | 0.8 | 0.157833 |
Target: 5'- cAGCGGCAGGUUCGGGCgcagcagcucgccGCUCAUCGu -3' miRNA: 3'- -UCGUCGUCCAAGUCCGa------------CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 24941 | 0.67 | 0.738464 |
Target: 5'- cGCAGUgccAGGcUCgAGGUacacgcagaUGCCCGUCGGg -3' miRNA: 3'- uCGUCG---UCCaAG-UCCG---------ACGGGUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 24942 | 0.67 | 0.728461 |
Target: 5'- cAGCAGCuGGgc--GGCuUGCCCggCAGg -3' miRNA: 3'- -UCGUCGuCCaaguCCG-ACGGGuaGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 26032 | 0.66 | 0.822992 |
Target: 5'- cGGCAGCaaaAGGUgCGGGCcaggUGCUCGcUCGGc -3' miRNA: 3'- -UCGUCG---UCCAaGUCCG----ACGGGU-AGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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