Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6358 | 5' | -57.1 | NC_001847.1 | + | 121374 | 1.08 | 0.001903 |
Target: 5'- cAGCAGCAGGUUCAGGCUGCCCAUCAGc -3' miRNA: 3'- -UCGUCGUCCAAGUCCGACGGGUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 23899 | 0.8 | 0.157833 |
Target: 5'- cAGCGGCAGGUUCGGGCgcagcagcucgccGCUCAUCGu -3' miRNA: 3'- -UCGUCGUCCAAGUCCGa------------CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 10867 | 0.77 | 0.233528 |
Target: 5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3' miRNA: 3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 123177 | 0.75 | 0.311947 |
Target: 5'- cGCGGCGGcGcUCAGGCcGCCCAUCc- -3' miRNA: 3'- uCGUCGUC-CaAGUCCGaCGGGUAGuc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 99554 | 0.73 | 0.400053 |
Target: 5'- cGCAGCAGGUUCuugAGGUUGgCCAgccCGGc -3' miRNA: 3'- uCGUCGUCCAAG---UCCGACgGGUa--GUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 64020 | 0.73 | 0.408813 |
Target: 5'- gGGCGGCGGGa-CGGGCuUGCCCG-CGGu -3' miRNA: 3'- -UCGUCGUCCaaGUCCG-ACGGGUaGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 39423 | 0.73 | 0.417693 |
Target: 5'- aAGCAGCgAGGggggcgcgUGGGCguaGCCCAUCAGc -3' miRNA: 3'- -UCGUCG-UCCaa------GUCCGa--CGGGUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 62900 | 0.72 | 0.435799 |
Target: 5'- uGCAGCGGGUggcgCGGGUgcucgggGCCCG-CGGg -3' miRNA: 3'- uCGUCGUCCAa---GUCCGa------CGGGUaGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 133180 | 0.72 | 0.473321 |
Target: 5'- uGC-GCGGGcgCGGGCUGCCC-UCGc -3' miRNA: 3'- uCGuCGUCCaaGUCCGACGGGuAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 21367 | 0.71 | 0.502497 |
Target: 5'- cGGCGGCucGGGccgccUCGGGCgGCUCGUCAGc -3' miRNA: 3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 46983 | 0.71 | 0.506448 |
Target: 5'- cGCAGCAGGca-GGugaauacgcgaaucuGCUGCCCGUCAa -3' miRNA: 3'- uCGUCGUCCaagUC---------------CGACGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 88395 | 0.71 | 0.512398 |
Target: 5'- cGCGGCGGG--CGGGC-GCgCCGUCGGg -3' miRNA: 3'- uCGUCGUCCaaGUCCGaCG-GGUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 5723 | 0.71 | 0.532433 |
Target: 5'- cGCAGCAGG--CGGGC-GUCgCAUCAGg -3' miRNA: 3'- uCGUCGUCCaaGUCCGaCGG-GUAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 53034 | 0.71 | 0.532433 |
Target: 5'- gGGCGGCAGGcgcaaacgCAGGC-GCCCuccggcgacggcGUCAGa -3' miRNA: 3'- -UCGUCGUCCaa------GUCCGaCGGG------------UAGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 106672 | 0.7 | 0.562984 |
Target: 5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3' miRNA: 3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 3859 | 0.7 | 0.562984 |
Target: 5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3' miRNA: 3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 121000 | 0.7 | 0.573277 |
Target: 5'- uAGCGGCcgcccAGGcgCGGGCcccGCCCAUCGc -3' miRNA: 3'- -UCGUCG-----UCCaaGUCCGa--CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 127353 | 0.7 | 0.573277 |
Target: 5'- cGCGGCAGGggC-GGCgggGCCCGagccUCGGc -3' miRNA: 3'- uCGUCGUCCaaGuCCGa--CGGGU----AGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 123396 | 0.7 | 0.583613 |
Target: 5'- cAGCAGCuGGUUgAGGCgGUCCccCAGc -3' miRNA: 3'- -UCGUCGuCCAAgUCCGaCGGGuaGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 47549 | 0.69 | 0.604386 |
Target: 5'- cAGCacGGCGGGcgCGGGgaGCCCggCGGc -3' miRNA: 3'- -UCG--UCGUCCaaGUCCgaCGGGuaGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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