miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 5' -57.1 NC_001847.1 + 121374 1.08 0.001903
Target:  5'- cAGCAGCAGGUUCAGGCUGCCCAUCAGc -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGACGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 23899 0.8 0.157833
Target:  5'- cAGCGGCAGGUUCGGGCgcagcagcucgccGCUCAUCGu -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGa------------CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 10867 0.77 0.233528
Target:  5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5'
6358 5' -57.1 NC_001847.1 + 123177 0.75 0.311947
Target:  5'- cGCGGCGGcGcUCAGGCcGCCCAUCc- -3'
miRNA:   3'- uCGUCGUC-CaAGUCCGaCGGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 99554 0.73 0.400053
Target:  5'- cGCAGCAGGUUCuugAGGUUGgCCAgccCGGc -3'
miRNA:   3'- uCGUCGUCCAAG---UCCGACgGGUa--GUC- -5'
6358 5' -57.1 NC_001847.1 + 64020 0.73 0.408813
Target:  5'- gGGCGGCGGGa-CGGGCuUGCCCG-CGGu -3'
miRNA:   3'- -UCGUCGUCCaaGUCCG-ACGGGUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 39423 0.73 0.417693
Target:  5'- aAGCAGCgAGGggggcgcgUGGGCguaGCCCAUCAGc -3'
miRNA:   3'- -UCGUCG-UCCaa------GUCCGa--CGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 62900 0.72 0.435799
Target:  5'- uGCAGCGGGUggcgCGGGUgcucgggGCCCG-CGGg -3'
miRNA:   3'- uCGUCGUCCAa---GUCCGa------CGGGUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 133180 0.72 0.473321
Target:  5'- uGC-GCGGGcgCGGGCUGCCC-UCGc -3'
miRNA:   3'- uCGuCGUCCaaGUCCGACGGGuAGUc -5'
6358 5' -57.1 NC_001847.1 + 21367 0.71 0.502497
Target:  5'- cGGCGGCucGGGccgccUCGGGCgGCUCGUCAGc -3'
miRNA:   3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 46983 0.71 0.506448
Target:  5'- cGCAGCAGGca-GGugaauacgcgaaucuGCUGCCCGUCAa -3'
miRNA:   3'- uCGUCGUCCaagUC---------------CGACGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 88395 0.71 0.512398
Target:  5'- cGCGGCGGG--CGGGC-GCgCCGUCGGg -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCG-GGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 5723 0.71 0.532433
Target:  5'- cGCAGCAGG--CGGGC-GUCgCAUCAGg -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGG-GUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 53034 0.71 0.532433
Target:  5'- gGGCGGCAGGcgcaaacgCAGGC-GCCCuccggcgacggcGUCAGa -3'
miRNA:   3'- -UCGUCGUCCaa------GUCCGaCGGG------------UAGUC- -5'
6358 5' -57.1 NC_001847.1 + 106672 0.7 0.562984
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 3859 0.7 0.562984
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 121000 0.7 0.573277
Target:  5'- uAGCGGCcgcccAGGcgCGGGCcccGCCCAUCGc -3'
miRNA:   3'- -UCGUCG-----UCCaaGUCCGa--CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 127353 0.7 0.573277
Target:  5'- cGCGGCAGGggC-GGCgggGCCCGagccUCGGc -3'
miRNA:   3'- uCGUCGUCCaaGuCCGa--CGGGU----AGUC- -5'
6358 5' -57.1 NC_001847.1 + 123396 0.7 0.583613
Target:  5'- cAGCAGCuGGUUgAGGCgGUCCccCAGc -3'
miRNA:   3'- -UCGUCGuCCAAgUCCGaCGGGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 47549 0.69 0.604386
Target:  5'- cAGCacGGCGGGcgCGGGgaGCCCggCGGc -3'
miRNA:   3'- -UCG--UCGUCCaaGUCCgaCGGGuaGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.