miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 5' -57.1 NC_001847.1 + 119232 0.69 0.625246
Target:  5'- gGGCGGCGGGg-CAGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 119112 0.69 0.625246
Target:  5'- gGGCGGCGGGg-CAGGCauggGgCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 64195 0.69 0.633599
Target:  5'- cGCGGCGGGaacaugcgcgggUCGGGgUGCCCGggCGGc -3'
miRNA:   3'- uCGUCGUCCa-----------AGUCCgACGGGUa-GUC- -5'
6358 5' -57.1 NC_001847.1 + 8293 0.69 0.636732
Target:  5'- aAGCGGCAGGgcuccccggggggcCAGGCUGUCgG-CAGg -3'
miRNA:   3'- -UCGUCGUCCaa------------GUCCGACGGgUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 13940 0.69 0.656554
Target:  5'- cGCGGCAGGg--GGGCcGCCCcgCGc -3'
miRNA:   3'- uCGUCGUCCaagUCCGaCGGGuaGUc -5'
6358 5' -57.1 NC_001847.1 + 18200 0.68 0.666962
Target:  5'- cGCGGCgAGGUcUCGGGCUGgCgGUCu- -3'
miRNA:   3'- uCGUCG-UCCA-AGUCCGACgGgUAGuc -5'
6358 5' -57.1 NC_001847.1 + 45662 0.68 0.67734
Target:  5'- uGCGGC-GGUUCAGGCUugcgacggcgGCgCCGUCc- -3'
miRNA:   3'- uCGUCGuCCAAGUCCGA----------CG-GGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 109263 0.68 0.67734
Target:  5'- gGGuCGGCAGGggCGGGCUGCaagCGagGGg -3'
miRNA:   3'- -UC-GUCGUCCaaGUCCGACGg--GUagUC- -5'
6358 5' -57.1 NC_001847.1 + 27792 0.68 0.69797
Target:  5'- cGCGGCGGGUgCGGGCucUGgCCAUUc- -3'
miRNA:   3'- uCGUCGUCCAaGUCCG--ACgGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 17783 0.67 0.718371
Target:  5'- aGGCcGCuAGGUUCAGGacggGCCCcagCGGg -3'
miRNA:   3'- -UCGuCG-UCCAAGUCCga--CGGGua-GUC- -5'
6358 5' -57.1 NC_001847.1 + 119172 0.67 0.718371
Target:  5'- gGGCGGCGGGg-CAGGCaUGggaCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCG-ACg--GGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 16971 0.67 0.728461
Target:  5'- gGGCGGCAGaUUgAGGg-GCaCCGUCAGg -3'
miRNA:   3'- -UCGUCGUCcAAgUCCgaCG-GGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 24942 0.67 0.728461
Target:  5'- cAGCAGCuGGgc--GGCuUGCCCggCAGg -3'
miRNA:   3'- -UCGUCGuCCaaguCCG-ACGGGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 3970 0.67 0.738464
Target:  5'- cGGCGGCgagggcgccgGGGgcCGGGCgcgcgGCCCcgCGGg -3'
miRNA:   3'- -UCGUCG----------UCCaaGUCCGa----CGGGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 3417 0.67 0.738464
Target:  5'- gAGCAGCccgGGGgcgcCAGGCgcaGCCCAggGGg -3'
miRNA:   3'- -UCGUCG---UCCaa--GUCCGa--CGGGUagUC- -5'
6358 5' -57.1 NC_001847.1 + 24941 0.67 0.738464
Target:  5'- cGCAGUgccAGGcUCgAGGUacacgcagaUGCCCGUCGGg -3'
miRNA:   3'- uCGUCG---UCCaAG-UCCG---------ACGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 102449 0.67 0.748371
Target:  5'- cAGCgGGCAGG-UCGGGC-GCCCcucCAGc -3'
miRNA:   3'- -UCG-UCGUCCaAGUCCGaCGGGua-GUC- -5'
6358 5' -57.1 NC_001847.1 + 72724 0.67 0.748371
Target:  5'- cGGCAGCAGGcacgCGGGCaacaGCgCCggCGGg -3'
miRNA:   3'- -UCGUCGUCCaa--GUCCGa---CG-GGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 18209 0.67 0.758171
Target:  5'- aGGCAGC-GGUaCGGGCUGUgCGgcucUCGGc -3'
miRNA:   3'- -UCGUCGuCCAaGUCCGACGgGU----AGUC- -5'
6358 5' -57.1 NC_001847.1 + 22482 0.67 0.767856
Target:  5'- cGCAGguGGggCaAGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaG-UCCGACgGGUAguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.