Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6358 | 5' | -57.1 | NC_001847.1 | + | 106672 | 0.7 | 0.562984 |
Target: 5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3' miRNA: 3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 58677 | 0.66 | 0.814203 |
Target: 5'- cGGUugGGCGGGcggCAGGCUGgCCAUg-- -3' miRNA: 3'- -UCG--UCGUCCaa-GUCCGACgGGUAguc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 97044 | 0.67 | 0.767856 |
Target: 5'- gGGCAGCGGcGUcCGGGCUGCUUu---- -3' miRNA: 3'- -UCGUCGUC-CAaGUCCGACGGGuaguc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 72724 | 0.67 | 0.748371 |
Target: 5'- cGGCAGCAGGcacgCGGGCaacaGCgCCggCGGg -3' miRNA: 3'- -UCGUCGUCCaa--GUCCGa---CG-GGuaGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 106791 | 0.66 | 0.796117 |
Target: 5'- cAGCAGCGGGcggaugaCGGccgcGCUGCCCGcCGGc -3' miRNA: 3'- -UCGUCGUCCaa-----GUC----CGACGGGUaGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 91882 | 0.66 | 0.805241 |
Target: 5'- cGCAGCAGGUgcccccCGGGCgccgcgccGCCCGc--- -3' miRNA: 3'- uCGUCGUCCAa-----GUCCGa-------CGGGUaguc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 2293 | 0.66 | 0.814203 |
Target: 5'- cGGCGGCGGGgccgcCGGGCggcauggGCCCcagcacgCGGg -3' miRNA: 3'- -UCGUCGUCCaa---GUCCGa------CGGGua-----GUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 3859 | 0.7 | 0.562984 |
Target: 5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3' miRNA: 3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 121000 | 0.7 | 0.573277 |
Target: 5'- uAGCGGCcgcccAGGcgCGGGCcccGCCCAUCGc -3' miRNA: 3'- -UCGUCG-----UCCaaGUCCGa--CGGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 127353 | 0.7 | 0.573277 |
Target: 5'- cGCGGCAGGggC-GGCgggGCCCGagccUCGGc -3' miRNA: 3'- uCGUCGUCCaaGuCCGa--CGGGU----AGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 18209 | 0.67 | 0.758171 |
Target: 5'- aGGCAGC-GGUaCGGGCUGUgCGgcucUCGGc -3' miRNA: 3'- -UCGUCGuCCAaGUCCGACGgGU----AGUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 22482 | 0.67 | 0.767856 |
Target: 5'- cGCAGguGGggCaAGGCUGgCCGUg-- -3' miRNA: 3'- uCGUCguCCaaG-UCCGACgGGUAguc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 26391 | 0.66 | 0.775514 |
Target: 5'- aAGCAGCGGG--CGGGCccgucguccgccGCCCAUCc- -3' miRNA: 3'- -UCGUCGUCCaaGUCCGa-----------CGGGUAGuc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 79647 | 0.66 | 0.777415 |
Target: 5'- cAGCAGCAGGgccCAcGUcGCCCAUagCAGg -3' miRNA: 3'- -UCGUCGUCCaa-GUcCGaCGGGUA--GUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 109263 | 0.68 | 0.67734 |
Target: 5'- gGGuCGGCAGGggCGGGCUGCaagCGagGGg -3' miRNA: 3'- -UC-GUCGUCCaaGUCCGACGg--GUagUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 13940 | 0.69 | 0.656554 |
Target: 5'- cGCGGCAGGg--GGGCcGCCCcgCGc -3' miRNA: 3'- uCGUCGUCCaagUCCGaCGGGuaGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 64195 | 0.69 | 0.633599 |
Target: 5'- cGCGGCGGGaacaugcgcgggUCGGGgUGCCCGggCGGc -3' miRNA: 3'- uCGUCGUCCa-----------AGUCCgACGGGUa-GUC- -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 119232 | 0.69 | 0.625246 |
Target: 5'- gGGCGGCGGGg-CAGGCauggGgCCGUCGa -3' miRNA: 3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 119112 | 0.69 | 0.625246 |
Target: 5'- gGGCGGCGGGg-CAGGCauggGgCCGUCGa -3' miRNA: 3'- -UCGUCGUCCaaGUCCGa---CgGGUAGUc -5' |
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6358 | 5' | -57.1 | NC_001847.1 | + | 123396 | 0.7 | 0.583613 |
Target: 5'- cAGCAGCuGGUUgAGGCgGUCCccCAGc -3' miRNA: 3'- -UCGUCGuCCAAgUCCGaCGGGuaGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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