miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 5' -57.1 NC_001847.1 + 97044 0.67 0.767856
Target:  5'- gGGCAGCGGcGUcCGGGCUGCUUu---- -3'
miRNA:   3'- -UCGUCGUC-CAaGUCCGACGGGuaguc -5'
6358 5' -57.1 NC_001847.1 + 23899 0.8 0.157833
Target:  5'- cAGCGGCAGGUUCGGGCgcagcagcucgccGCUCAUCGu -3'
miRNA:   3'- -UCGUCGUCCAAGUCCGa------------CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 10867 0.77 0.233528
Target:  5'- cGCGGCGGGcgCGGGC-GCCCAggCAGa -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGGGUa-GUC- -5'
6358 5' -57.1 NC_001847.1 + 18200 0.68 0.666962
Target:  5'- cGCGGCgAGGUcUCGGGCUGgCgGUCu- -3'
miRNA:   3'- uCGUCG-UCCA-AGUCCGACgGgUAGuc -5'
6358 5' -57.1 NC_001847.1 + 27792 0.68 0.69797
Target:  5'- cGCGGCGGGUgCGGGCucUGgCCAUUc- -3'
miRNA:   3'- uCGUCGUCCAaGUCCG--ACgGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 64020 0.73 0.408813
Target:  5'- gGGCGGCGGGa-CGGGCuUGCCCG-CGGu -3'
miRNA:   3'- -UCGUCGUCCaaGUCCG-ACGGGUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 106672 0.7 0.562984
Target:  5'- cAGCAGCGGGcccUCcagcGGCggcgGCCCGUCGc -3'
miRNA:   3'- -UCGUCGUCCa--AGu---CCGa---CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 8293 0.69 0.636732
Target:  5'- aAGCGGCAGGgcuccccggggggcCAGGCUGUCgG-CAGg -3'
miRNA:   3'- -UCGUCGUCCaa------------GUCCGACGGgUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 125295 0.67 0.767856
Target:  5'- cGCAGguGGggCaAGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaG-UCCGACgGGUAguc -5'
6358 5' -57.1 NC_001847.1 + 75015 0.66 0.805241
Target:  5'- gGGCGGgGGGccagCGGGCagaagGCgCCGUCGGu -3'
miRNA:   3'- -UCGUCgUCCaa--GUCCGa----CG-GGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 26032 0.66 0.822992
Target:  5'- cGGCAGCaaaAGGUgCGGGCcaggUGCUCGcUCGGc -3'
miRNA:   3'- -UCGUCG---UCCAaGUCCG----ACGGGU-AGUC- -5'
6358 5' -57.1 NC_001847.1 + 46983 0.71 0.506448
Target:  5'- cGCAGCAGGca-GGugaauacgcgaaucuGCUGCCCGUCAa -3'
miRNA:   3'- uCGUCGUCCaagUC---------------CGACGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 21367 0.71 0.502497
Target:  5'- cGGCGGCucGGGccgccUCGGGCgGCUCGUCAGc -3'
miRNA:   3'- -UCGUCG--UCCa----AGUCCGaCGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 24941 0.67 0.738464
Target:  5'- cGCAGUgccAGGcUCgAGGUacacgcagaUGCCCGUCGGg -3'
miRNA:   3'- uCGUCG---UCCaAG-UCCG---------ACGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 102449 0.67 0.748371
Target:  5'- cAGCgGGCAGG-UCGGGC-GCCCcucCAGc -3'
miRNA:   3'- -UCG-UCGUCCaAGUCCGaCGGGua-GUC- -5'
6358 5' -57.1 NC_001847.1 + 5723 0.71 0.532433
Target:  5'- cGCAGCAGG--CGGGC-GUCgCAUCAGg -3'
miRNA:   3'- uCGUCGUCCaaGUCCGaCGG-GUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 16843 0.66 0.777415
Target:  5'- cAGUGGC-GGUgCAGGUguagucgacggGCCCGUCGGu -3'
miRNA:   3'- -UCGUCGuCCAaGUCCGa----------CGGGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 58677 0.66 0.814203
Target:  5'- cGGUugGGCGGGcggCAGGCUGgCCAUg-- -3'
miRNA:   3'- -UCG--UCGUCCaa-GUCCGACgGGUAguc -5'
6358 5' -57.1 NC_001847.1 + 47549 0.69 0.604386
Target:  5'- cAGCacGGCGGGcgCGGGgaGCCCggCGGc -3'
miRNA:   3'- -UCG--UCGUCCaaGUCCgaCGGGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 3417 0.67 0.738464
Target:  5'- gAGCAGCccgGGGgcgcCAGGCgcaGCCCAggGGg -3'
miRNA:   3'- -UCGUCG---UCCaa--GUCCGa--CGGGUagUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.