miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6358 5' -57.1 NC_001847.1 + 45662 0.68 0.67734
Target:  5'- uGCGGC-GGUUCAGGCUugcgacggcgGCgCCGUCc- -3'
miRNA:   3'- uCGUCGuCCAAGUCCGA----------CG-GGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 22482 0.67 0.767856
Target:  5'- cGCAGguGGggCaAGGCUGgCCGUg-- -3'
miRNA:   3'- uCGUCguCCaaG-UCCGACgGGUAguc -5'
6358 5' -57.1 NC_001847.1 + 18209 0.67 0.758171
Target:  5'- aGGCAGC-GGUaCGGGCUGUgCGgcucUCGGc -3'
miRNA:   3'- -UCGUCGuCCAaGUCCGACGgGU----AGUC- -5'
6358 5' -57.1 NC_001847.1 + 72724 0.67 0.748371
Target:  5'- cGGCAGCAGGcacgCGGGCaacaGCgCCggCGGg -3'
miRNA:   3'- -UCGUCGUCCaa--GUCCGa---CG-GGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 3970 0.67 0.738464
Target:  5'- cGGCGGCgagggcgccgGGGgcCGGGCgcgcgGCCCcgCGGg -3'
miRNA:   3'- -UCGUCG----------UCCaaGUCCGa----CGGGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 24942 0.67 0.728461
Target:  5'- cAGCAGCuGGgc--GGCuUGCCCggCAGg -3'
miRNA:   3'- -UCGUCGuCCaaguCCG-ACGGGuaGUC- -5'
6358 5' -57.1 NC_001847.1 + 16971 0.67 0.728461
Target:  5'- gGGCGGCAGaUUgAGGg-GCaCCGUCAGg -3'
miRNA:   3'- -UCGUCGUCcAAgUCCgaCG-GGUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 17783 0.67 0.718371
Target:  5'- aGGCcGCuAGGUUCAGGacggGCCCcagCGGg -3'
miRNA:   3'- -UCGuCG-UCCAAGUCCga--CGGGua-GUC- -5'
6358 5' -57.1 NC_001847.1 + 119172 0.67 0.718371
Target:  5'- gGGCGGCGGGg-CAGGCaUGggaCCGUCGa -3'
miRNA:   3'- -UCGUCGUCCaaGUCCG-ACg--GGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 26391 0.66 0.775514
Target:  5'- aAGCAGCGGG--CGGGCccgucguccgccGCCCAUCc- -3'
miRNA:   3'- -UCGUCGUCCaaGUCCGa-----------CGGGUAGuc -5'
6358 5' -57.1 NC_001847.1 + 79647 0.66 0.777415
Target:  5'- cAGCAGCAGGgccCAcGUcGCCCAUagCAGg -3'
miRNA:   3'- -UCGUCGUCCaa-GUcCGaCGGGUA--GUC- -5'
6358 5' -57.1 NC_001847.1 + 14200 0.66 0.786838
Target:  5'- uGGCGGCGGGgcuggcggUCAGGCcgGCCgGgggCGu -3'
miRNA:   3'- -UCGUCGUCCa-------AGUCCGa-CGGgUa--GUc -5'
6358 5' -57.1 NC_001847.1 + 120070 0.66 0.814203
Target:  5'- uGCcGCAGGcgaucccCGGGCcGCCgGUCAGa -3'
miRNA:   3'- uCGuCGUCCaa-----GUCCGaCGGgUAGUC- -5'
6358 5' -57.1 NC_001847.1 + 2293 0.66 0.814203
Target:  5'- cGGCGGCGGGgccgcCGGGCggcauggGCCCcagcacgCGGg -3'
miRNA:   3'- -UCGUCGUCCaa---GUCCGa------CGGGua-----GUC- -5'
6358 5' -57.1 NC_001847.1 + 70253 0.66 0.805241
Target:  5'- gGGCGGCGGGcgcgCGGcGUUGCUC-UCGGc -3'
miRNA:   3'- -UCGUCGUCCaa--GUC-CGACGGGuAGUC- -5'
6358 5' -57.1 NC_001847.1 + 48950 0.66 0.805241
Target:  5'- cAGCAGCcgccGGU--AGGCcgcGCCCGUCAu -3'
miRNA:   3'- -UCGUCGu---CCAagUCCGa--CGGGUAGUc -5'
6358 5' -57.1 NC_001847.1 + 91882 0.66 0.805241
Target:  5'- cGCAGCAGGUgcccccCGGGCgccgcgccGCCCGc--- -3'
miRNA:   3'- uCGUCGUCCAa-----GUCCGa-------CGGGUaguc -5'
6358 5' -57.1 NC_001847.1 + 106791 0.66 0.796117
Target:  5'- cAGCAGCGGGcggaugaCGGccgcGCUGCCCGcCGGc -3'
miRNA:   3'- -UCGUCGUCCaa-----GUC----CGACGGGUaGUC- -5'
6358 5' -57.1 NC_001847.1 + 81822 0.66 0.796117
Target:  5'- uGCGGCGuGGUcCAGGCgagGUCCAgcgcguacgUCAGc -3'
miRNA:   3'- uCGUCGU-CCAaGUCCGa--CGGGU---------AGUC- -5'
6358 5' -57.1 NC_001847.1 + 85882 0.66 0.786838
Target:  5'- gAGCAGCgcgagcuugucgAGGUcCAGGCgaGCCgCGUCGc -3'
miRNA:   3'- -UCGUCG------------UCCAaGUCCGa-CGG-GUAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.