miRNA display CGI


Results 81 - 100 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 95335 0.73 0.192992
Target:  5'- gGGCCCGCCGCggacgacgcgGUCGacuGgCGGGGGCu -3'
miRNA:   3'- aCUGGGCGGCGaa--------CGGC---CgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 73175 0.73 0.192992
Target:  5'- -uGCCCGCCGC--GCCGGCgGGcacggcgcgcGGGCa -3'
miRNA:   3'- acUGGGCGGCGaaCGGCCGgUC----------CCCG- -5'
6359 5' -64.6 NC_001847.1 + 62512 0.73 0.192992
Target:  5'- cGGCCacaGCCGCccuuUUGCCcguaGCCAGGGGa -3'
miRNA:   3'- aCUGGg--CGGCG----AACGGc---CGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 102942 0.73 0.192992
Target:  5'- cGGcCCCGcCCGCggGCCucgggccccGGCCGGGGGg -3'
miRNA:   3'- aCU-GGGC-GGCGaaCGG---------CCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 105929 0.73 0.192992
Target:  5'- cGGCCCGCCGCg-GCCGagagcaccgggaGCCcGGcGGCg -3'
miRNA:   3'- aCUGGGCGGCGaaCGGC------------CGGuCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 53355 0.73 0.192992
Target:  5'- cGACgCGCUGC-UGgCGGCCGcGGGCa -3'
miRNA:   3'- aCUGgGCGGCGaACgGCCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 3116 0.73 0.192992
Target:  5'- cGGCCCGCCGCg-GCCGagagcaccgggaGCCcGGcGGCg -3'
miRNA:   3'- aCUGGGCGGCGaaCGGC------------CGGuCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 129 0.73 0.192992
Target:  5'- cGGcCCCGcCCGCggGCCucgggccccGGCCGGGGGg -3'
miRNA:   3'- aCU-GGGC-GGCGaaCGG---------CCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 34533 0.72 0.197638
Target:  5'- cGAUgCGCCGCccGCCGGgCGcuuGGGGCc -3'
miRNA:   3'- aCUGgGCGGCGaaCGGCCgGU---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 92269 0.72 0.197638
Target:  5'- uUGGCgCGgaGCUUGUCGGCCAGGucgcgguuGGCg -3'
miRNA:   3'- -ACUGgGCggCGAACGGCCGGUCC--------CCG- -5'
6359 5' -64.6 NC_001847.1 + 79125 0.72 0.197638
Target:  5'- aGGCCCGCCGCcaggacgUGCCcGUCGcGGGGg -3'
miRNA:   3'- aCUGGGCGGCGa------ACGGcCGGU-CCCCg -5'
6359 5' -64.6 NC_001847.1 + 28855 0.72 0.197638
Target:  5'- cGGCCgCGCgCGCgacGCCGGCgGcgcuGGGGCg -3'
miRNA:   3'- aCUGG-GCG-GCGaa-CGGCCGgU----CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 33520 0.72 0.197638
Target:  5'- gGGCgCCGCCGCggaggcGCCGGgCGcGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa----CGGCCgGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 90466 0.72 0.197638
Target:  5'- cGGCCCauccGCgGCUcGCCGGUCAcggugcaggcGGGGCa -3'
miRNA:   3'- aCUGGG----CGgCGAaCGGCCGGU----------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 54410 0.72 0.200949
Target:  5'- gGGCgCCGCCGCgguugGCCucggcGGCCcgggcagagacgagGGGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa---CGG-----CCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 28322 0.72 0.202382
Target:  5'- cGACCCugcguGCCGCUcGCCGGC---GGGCa -3'
miRNA:   3'- aCUGGG-----CGGCGAaCGGCCGgucCCCG- -5'
6359 5' -64.6 NC_001847.1 + 77492 0.72 0.202382
Target:  5'- cGGCCCGCCG---GCCcgagucgguGGCCGGGGaGCu -3'
miRNA:   3'- aCUGGGCGGCgaaCGG---------CCGGUCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 14146 0.72 0.202382
Target:  5'- cGGCCgGCUGCgcagcGgCGGCC-GGGGCg -3'
miRNA:   3'- aCUGGgCGGCGaa---CgGCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 5209 0.72 0.202382
Target:  5'- cGGCUcucuCGCCGCggcgGCCGGC--GGGGCg -3'
miRNA:   3'- aCUGG----GCGGCGaa--CGGCCGguCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 108022 0.72 0.202382
Target:  5'- cGGCUcucuCGCCGCggcgGCCGGC--GGGGCg -3'
miRNA:   3'- aCUGG----GCGGCGaa--CGGCCGguCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.