miRNA display CGI


Results 81 - 100 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 129936 0.66 0.47135
Target:  5'- cGG-CCGCCGCggcgagagaGCCGGCgA-GGGCu -3'
miRNA:   3'- aCUgGGCGGCGaa-------CGGCCGgUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 91694 0.66 0.470455
Target:  5'- cGACCgCGCCgucgccccgggucGCgacGCCGGCCAGcaGCa -3'
miRNA:   3'- aCUGG-GCGG-------------CGaa-CGGCCGGUCccCG- -5'
6359 5' -64.6 NC_001847.1 + 123520 0.66 0.467775
Target:  5'- aGGgCUGCCGCggGCUcggcuaaGGCCAaggccgcugcgaacGGGGCu -3'
miRNA:   3'- aCUgGGCGGCGaaCGG-------CCGGU--------------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 81219 0.66 0.462439
Target:  5'- aGAgCCGCCGUc-GCCGucGCCuccgggcGGGGCc -3'
miRNA:   3'- aCUgGGCGGCGaaCGGC--CGGu------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 56051 0.66 0.462439
Target:  5'- cGACCCcugggaggcGCCGCUgaagccUGCgCGGCUgagcgcgcccGGGGuGCg -3'
miRNA:   3'- aCUGGG---------CGGCGA------ACG-GCCGG----------UCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 125500 0.66 0.462439
Target:  5'- -cGCCCgGCUGCUcgagcgGCgGGCCGGcGcGGCg -3'
miRNA:   3'- acUGGG-CGGCGAa-----CGgCCGGUC-C-CCG- -5'
6359 5' -64.6 NC_001847.1 + 109837 0.66 0.462439
Target:  5'- gGGCgCGCC-CUcGUCGGCgAGGGcGCc -3'
miRNA:   3'- aCUGgGCGGcGAaCGGCCGgUCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 21630 0.66 0.462439
Target:  5'- uUGGCCgG-CGCggGCCGcGCCcGGGcGCg -3'
miRNA:   3'- -ACUGGgCgGCGaaCGGC-CGGuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 71069 0.66 0.462439
Target:  5'- -cACCUcgaggGCgGCgaggcgGCCGGCCAGGGcGUc -3'
miRNA:   3'- acUGGG-----CGgCGaa----CGGCCGGUCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 99044 0.66 0.462439
Target:  5'- -cGCCCGCggauaaaaaUGCccGCCaGGCCcGGGGCc -3'
miRNA:   3'- acUGGGCG---------GCGaaCGG-CCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 119842 0.66 0.462439
Target:  5'- cGGCCC-CCGaCgccgUGCCGGUCAGcgucGGGa -3'
miRNA:   3'- aCUGGGcGGC-Ga---ACGGCCGGUC----CCCg -5'
6359 5' -64.6 NC_001847.1 + 131707 0.66 0.462439
Target:  5'- gGGCgCUGCCGCacgUGgCGGCCuGcGuGGCa -3'
miRNA:   3'- aCUG-GGCGGCGa--ACgGCCGGuC-C-CCG- -5'
6359 5' -64.6 NC_001847.1 + 58563 0.66 0.462439
Target:  5'- -cAUCC-UCGaCUUGCCGGCCAGcuaagcGGGCc -3'
miRNA:   3'- acUGGGcGGC-GAACGGCCGGUC------CCCG- -5'
6359 5' -64.6 NC_001847.1 + 124443 0.66 0.462439
Target:  5'- uUGGCCgG-CGCggGCCGcGCCcGGGcGCg -3'
miRNA:   3'- -ACUGGgCgGCGaaCGGC-CGGuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 19612 0.66 0.462439
Target:  5'- gGGCCCGa-GCU--CgGGCCcGGGGCg -3'
miRNA:   3'- aCUGGGCggCGAacGgCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 90911 0.66 0.462439
Target:  5'- -uGCCgGCCGCUagcagcaGCCGGgCGacggcguaguGGGGCa -3'
miRNA:   3'- acUGGgCGGCGAa------CGGCCgGU----------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 14320 0.66 0.462439
Target:  5'- --uCCCGCUGCUcgcggugggGCCgGGCguGGuGGCg -3'
miRNA:   3'- acuGGGCGGCGAa--------CGG-CCGguCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 102809 0.66 0.4589
Target:  5'- gGGCCCccuccgcGCCGCgccgcGCgGGCCcccugcgaccccggGGGGGUg -3'
miRNA:   3'- aCUGGG-------CGGCGaa---CGgCCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 57988 0.67 0.453618
Target:  5'- gGACCgG-CGCggUGgCGGCgCAGGcGGCg -3'
miRNA:   3'- aCUGGgCgGCGa-ACgGCCG-GUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 109248 0.67 0.453618
Target:  5'- aGACaaaaaGCCaGCggGUCGG-CAGGGGCg -3'
miRNA:   3'- aCUGgg---CGG-CGaaCGGCCgGUCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.