miRNA display CGI


Results 61 - 80 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 78325 0.66 0.480347
Target:  5'- -cGCgCGCCGCggGcCCGGCUuGGGcGCc -3'
miRNA:   3'- acUGgGCGGCGaaC-GGCCGGuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 123496 0.66 0.480347
Target:  5'- ---nCCGCCGCaaGCgGgGCC-GGGGCc -3'
miRNA:   3'- acugGGCGGCGaaCGgC-CGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 30348 0.66 0.480347
Target:  5'- cGACCCGCUGCccggGgaGGCgCuGGcGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa--CggCCG-GuCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 124948 0.66 0.479444
Target:  5'- gGGCCCggcggcggcggcgGCgCGCaaaaGCCGGCgCAGcGGGCc -3'
miRNA:   3'- aCUGGG-------------CG-GCGaa--CGGCCG-GUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 22135 0.66 0.479444
Target:  5'- gGGCCCggcggcggcggcgGCgCGCaaaaGCCGGCgCAGcGGGCc -3'
miRNA:   3'- aCUGGG-------------CG-GCGaa--CGGCCG-GUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 8932 0.66 0.474939
Target:  5'- cGAcCCCGCCaagugaGCUccgcccacccaGCCcccacccucaucucgGGCCGGGGGCg -3'
miRNA:   3'- aCU-GGGCGG------CGAa----------CGG---------------CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 17454 0.66 0.47135
Target:  5'- -cGCCCucgguggcgGCCGUcagggagcGCaCGGUCAGGGGCa -3'
miRNA:   3'- acUGGG---------CGGCGaa------CG-GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132775 0.66 0.47135
Target:  5'- cGAaaagCCGCCGCc-GCCgacgcGGCCGGGccGGCg -3'
miRNA:   3'- aCUg---GGCGGCGaaCGG-----CCGGUCC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 32778 0.66 0.47135
Target:  5'- aGAUCC-CUGUgggggGagGGCCGGGGGCg -3'
miRNA:   3'- aCUGGGcGGCGaa---CggCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 102400 0.66 0.47135
Target:  5'- -cGCCCGCgaaaauaGCc-GCCGGCCGGaGGCc -3'
miRNA:   3'- acUGGGCGg------CGaaCGGCCGGUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 2178 0.66 0.47135
Target:  5'- cGcCCgCGCCGCcugGgCGGCguGcGGGCg -3'
miRNA:   3'- aCuGG-GCGGCGaa-CgGCCGguC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 58201 0.66 0.47135
Target:  5'- cGGCCagcaGgCGCUccgggcggaucUGCCcGCCGGGcGGCa -3'
miRNA:   3'- aCUGGg---CgGCGA-----------ACGGcCGGUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 43490 0.66 0.47135
Target:  5'- cGuCCCGCCGCgccGCCGucgaucGCUacuGGGcGGCg -3'
miRNA:   3'- aCuGGGCGGCGaa-CGGC------CGG---UCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 57657 0.66 0.47135
Target:  5'- cGACUCggGCCgGCggGCCgGGCCGGGcgcccGGCg -3'
miRNA:   3'- aCUGGG--CGG-CGaaCGG-CCGGUCC-----CCG- -5'
6359 5' -64.6 NC_001847.1 + 96426 0.66 0.47135
Target:  5'- gGGCCgGCgGCagGCgCGGCCccGGaGGCa -3'
miRNA:   3'- aCUGGgCGgCGaaCG-GCCGGu-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 27123 0.66 0.47135
Target:  5'- cGG-CCGCCGCggcgagagaGCCGGCgA-GGGCu -3'
miRNA:   3'- aCUgGGCGGCGaa-------CGGCCGgUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 96176 0.66 0.47135
Target:  5'- aGcCCCGCCGCg-GCCGccGCCAuGGcGCu -3'
miRNA:   3'- aCuGGGCGGCGaaCGGC--CGGUcCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 29962 0.66 0.47135
Target:  5'- cGAaaagCCGCCGCc-GCCgacgcGGCCGGGccGGCg -3'
miRNA:   3'- aCUg---GGCGGCGaaCGG-----CCGGUCC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 95820 0.66 0.47135
Target:  5'- gGACCCG--GCUcGgCGG-CAGGGGCa -3'
miRNA:   3'- aCUGGGCggCGAaCgGCCgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 129936 0.66 0.47135
Target:  5'- cGG-CCGCCGCggcgagagaGCCGGCgA-GGGCu -3'
miRNA:   3'- aCUgGGCGGCGaa-------CGGCCGgUcCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.