miRNA display CGI


Results 61 - 80 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 65110 0.73 0.171173
Target:  5'- cGAgCCGCgGCUcgGCUGGCgGuGGGGCu -3'
miRNA:   3'- aCUgGGCGgCGAa-CGGCCGgU-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 76914 0.73 0.175353
Target:  5'- -cGCgCCGCCGC-UGCCGcCCGGcGGGCa -3'
miRNA:   3'- acUG-GGCGGCGaACGGCcGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 60482 0.79 0.071394
Target:  5'- aUGGCgCCGCCGCUUugugcgcgcGCgGGCCGGcGGGCc -3'
miRNA:   3'- -ACUG-GGCGGCGAA---------CGgCCGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 111408 0.78 0.087544
Target:  5'- aGGcCCCGCCagggGCggcGCuCGGCCGGGGGCg -3'
miRNA:   3'- aCU-GGGCGG----CGaa-CG-GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 106051 0.76 0.104475
Target:  5'- -cGCCCGCgccgUGCUcGCCGGCggCAGGGGCg -3'
miRNA:   3'- acUGGGCG----GCGAaCGGCCG--GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 134378 0.76 0.109853
Target:  5'- cGGCgCCGCCgGCggcggGCCGGCCucgcccuagGGGGGCc -3'
miRNA:   3'- aCUG-GGCGG-CGaa---CGGCCGG---------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 43419 0.75 0.134054
Target:  5'- gGACCucgCGCUGCUgcUGCUGGCCGgcgucgcgacccGGGGCg -3'
miRNA:   3'- aCUGG---GCGGCGA--ACGGCCGGU------------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 14285 0.75 0.137743
Target:  5'- --uCCCGCCGCggcgaaauggcgugGCCGGCCGccucucGGGGCc -3'
miRNA:   3'- acuGGGCGGCGaa------------CGGCCGGU------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 75763 0.74 0.151585
Target:  5'- -cGCCCGCCGCgcgggUGaacaCGGCCGcGGGCu -3'
miRNA:   3'- acUGGGCGGCGa----ACg---GCCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 56888 0.74 0.159163
Target:  5'- gGGCCCGCCgGCgacggcgacGCCGGCgGGcGGGUg -3'
miRNA:   3'- aCUGGGCGG-CGaa-------CGGCCGgUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 13073 0.71 0.246237
Target:  5'- gUGACgCGCUGCUgcgcgagugcgcaacUGCCauuuuuugucgcGGCCGGGGcGCg -3'
miRNA:   3'- -ACUGgGCGGCGA---------------ACGG------------CCGGUCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 13136 0.71 0.24398
Target:  5'- -cGCCgCGCCGCcUGCCgcGGCCGGcgguuGGGCu -3'
miRNA:   3'- acUGG-GCGGCGaACGG--CCGGUC-----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 90848 0.73 0.188441
Target:  5'- cUGGCCCGCCGCgccgcGCCGcGCCGccGGUg -3'
miRNA:   3'- -ACUGGGCGGCGaa---CGGC-CGGUccCCG- -5'
6359 5' -64.6 NC_001847.1 + 95335 0.73 0.192992
Target:  5'- gGGCCCGCCGCggacgacgcgGUCGacuGgCGGGGGCu -3'
miRNA:   3'- aCUGGGCGGCGaa--------CGGC---CgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 33520 0.72 0.197638
Target:  5'- gGGCgCCGCCGCggaggcGCCGGgCGcGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa----CGGCCgGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 34533 0.72 0.197638
Target:  5'- cGAUgCGCCGCccGCCGGgCGcuuGGGGCc -3'
miRNA:   3'- aCUGgGCGGCGaaCGGCCgGU---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 28322 0.72 0.202382
Target:  5'- cGACCCugcguGCCGCUcGCCGGC---GGGCa -3'
miRNA:   3'- aCUGGG-----CGGCGAaCGGCCGgucCCCG- -5'
6359 5' -64.6 NC_001847.1 + 106696 0.72 0.2167
Target:  5'- cGGCCCGUCGCgcggcGCCGcggcguaGCCAGcgcGGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa---CGGC-------CGGUC---CCCG- -5'
6359 5' -64.6 NC_001847.1 + 73698 0.71 0.232956
Target:  5'- cGACCgccuCGCCGCgcccggcgGCgCGGCCGcGGGCg -3'
miRNA:   3'- aCUGG----GCGGCGaa------CG-GCCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 25811 0.71 0.238415
Target:  5'- cUGcUCCGCCGC--GUCGGCCGGGcaGGCu -3'
miRNA:   3'- -ACuGGGCGGCGaaCGGCCGGUCC--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.