miRNA display CGI


Results 41 - 60 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 68938 0.74 0.16308
Target:  5'- cGAgCCGCCGCUggGCgGcGCCgaugcggaagaGGGGGCg -3'
miRNA:   3'- aCUgGGCGGCGAa-CGgC-CGG-----------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 37580 0.76 0.115489
Target:  5'- -cGCUgGCCGCUgcggcUGCggCGGCCGGGGGCc -3'
miRNA:   3'- acUGGgCGGCGA-----ACG--GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 133049 0.81 0.047263
Target:  5'- cGGCCCGCCGCcgcGCgGGCCccgcGGGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa-CGgCCGGu---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 119568 0.74 0.159163
Target:  5'- cGAgCCGCCGCcUGCC-GCCgauGGGGGUu -3'
miRNA:   3'- aCUgGGCGGCGaACGGcCGG---UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132397 0.83 0.036438
Target:  5'- cGGCgCCGCCGC--GCCgGGCCGGGGGCc -3'
miRNA:   3'- aCUG-GGCGGCGaaCGG-CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 34533 0.72 0.197638
Target:  5'- cGAUgCGCCGCccGCCGGgCGcuuGGGGCc -3'
miRNA:   3'- aCUGgGCGGCGaaCGGCCgGU---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 101052 0.8 0.058127
Target:  5'- cGcACCCGCCGag-GCCGGCCccGGGGCc -3'
miRNA:   3'- aC-UGGGCGGCgaaCGGCCGGu-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 33520 0.72 0.197638
Target:  5'- gGGCgCCGCCGCggaggcGCCGGgCGcGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa----CGGCCgGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 102942 0.73 0.192992
Target:  5'- cGGcCCCGcCCGCggGCCucgggccccGGCCGGGGGg -3'
miRNA:   3'- aCU-GGGC-GGCGaaCGG---------CCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 32119 0.73 0.188441
Target:  5'- cGGCCCGcCCGCc-GCCGGCgCuGGGcGCc -3'
miRNA:   3'- aCUGGGC-GGCGaaCGGCCG-GuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 11315 0.73 0.179623
Target:  5'- -cGCCCGCCGag-GCCGGCgGGcGGCu -3'
miRNA:   3'- acUGGGCGGCgaaCGGCCGgUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 74272 0.73 0.175353
Target:  5'- gGGCCCGCgCGCgcgcucgcGCUGGCCucGGcGGGCg -3'
miRNA:   3'- aCUGGGCG-GCGaa------CGGCCGG--UC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 65110 0.73 0.171173
Target:  5'- cGAgCCGCgGCUcgGCUGGCgGuGGGGCu -3'
miRNA:   3'- aCUgGGCGgCGAa-CGGCCGgU-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 34172 0.74 0.159163
Target:  5'- cGGCUgaGgCGC-UGCgGGCCGGGGGCg -3'
miRNA:   3'- aCUGGg-CgGCGaACGgCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 134017 0.74 0.151585
Target:  5'- aGGCgCCGCCGCUggUGCUggaGGCCGcGGcGGCg -3'
miRNA:   3'- aCUG-GGCGGCGA--ACGG---CCGGU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 81164 0.75 0.137404
Target:  5'- cUGGCCCGCCGC--GCCGcUCGGaGGGCu -3'
miRNA:   3'- -ACUGGGCGGCGaaCGGCcGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 135020 0.75 0.126633
Target:  5'- aGGCCCGCgggcggggccggggCGCggggcGCCGGacCCAGGGGCg -3'
miRNA:   3'- aCUGGGCG--------------GCGaa---CGGCC--GGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 129322 0.76 0.107132
Target:  5'- gGGCCUGCCGg--GCgcggGGCCGGGGGCg -3'
miRNA:   3'- aCUGGGCGGCgaaCGg---CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 83936 0.76 0.104475
Target:  5'- gGGCCCGCuCGaagUGCgcgcggGGCCGGGGGCg -3'
miRNA:   3'- aCUGGGCG-GCga-ACGg-----CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 46208 0.78 0.087544
Target:  5'- cGGCggCCGCCGCcggGCCGGCCGcGGGGa -3'
miRNA:   3'- aCUG--GGCGGCGaa-CGGCCGGU-CCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.