miRNA display CGI


Results 41 - 60 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 43419 0.75 0.134054
Target:  5'- gGACCucgCGCUGCUgcUGCUGGCCGgcgucgcgacccGGGGCg -3'
miRNA:   3'- aCUGG---GCGGCGA--ACGGCCGGU------------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 34968 0.75 0.137404
Target:  5'- -aGCCgGCCgGCcaGgCGGCCAGGGGCa -3'
miRNA:   3'- acUGGgCGG-CGaaCgGCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 39590 0.75 0.137404
Target:  5'- gUGGCCCcagcGCUGCUgcgGCgCGGCCccagccccAGGGGCa -3'
miRNA:   3'- -ACUGGG----CGGCGAa--CG-GCCGG--------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 81164 0.75 0.137404
Target:  5'- cUGGCCCGCCGC--GCCGcUCGGaGGGCu -3'
miRNA:   3'- -ACUGGGCGGCGaaCGGCcGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 14285 0.75 0.137743
Target:  5'- --uCCCGCCGCggcgaaauggcgugGCCGGCCGccucucGGGGCc -3'
miRNA:   3'- acuGGGCGGCGaa------------CGGCCGGU------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 123821 0.75 0.14083
Target:  5'- cGGCgCCaGCCGCccGCCGGCCucGGcGGGCg -3'
miRNA:   3'- aCUG-GG-CGGCGaaCGGCCGG--UC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 27906 0.74 0.14792
Target:  5'- cGGCCCgGCCGCgcuUGCggaGGCCAGGgcGGCc -3'
miRNA:   3'- aCUGGG-CGGCGa--ACGg--CCGGUCC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 123470 0.74 0.14792
Target:  5'- cGACggCCGCCGCggGCuCGGCU-GGGGCc -3'
miRNA:   3'- aCUG--GGCGGCGaaCG-GCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 116955 0.74 0.14792
Target:  5'- aGACCuCGCCGCgcguccGCCaugGGCCcgcuGGGGCg -3'
miRNA:   3'- aCUGG-GCGGCGaa----CGG---CCGGu---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 106134 0.74 0.150477
Target:  5'- gGGCgCCGCUGCcgccggcGCCGGCCuccggguaggccauGGGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa-----CGGCCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 3321 0.74 0.150477
Target:  5'- gGGCgCCGCUGCcgccggcGCCGGCCuccggguaggccauGGGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa-----CGGCCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 31204 0.74 0.151585
Target:  5'- aGGCgCCGCCGCUggUGCUggaGGCCGcGGcGGCg -3'
miRNA:   3'- aCUG-GGCGGCGA--ACGG---CCGGU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 134017 0.74 0.151585
Target:  5'- aGGCgCCGCCGCUggUGCUggaGGCCGcGGcGGCg -3'
miRNA:   3'- aCUG-GGCGGCGA--ACGG---CCGGU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 75763 0.74 0.151585
Target:  5'- -cGCCCGCCGCgcgggUGaacaCGGCCGcGGGCu -3'
miRNA:   3'- acUGGGCGGCGa----ACg---GCCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 127327 0.74 0.151585
Target:  5'- cGACCggCGCCGaggcgGCCGGCugccgcggCAGGGGCg -3'
miRNA:   3'- aCUGG--GCGGCgaa--CGGCCG--------GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 102023 0.74 0.155332
Target:  5'- -cGCUCGCCGCcgccgcgGUCGGCCAGGauGGCg -3'
miRNA:   3'- acUGGGCGGCGaa-----CGGCCGGUCC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 31082 0.74 0.155332
Target:  5'- cGGCgCGCCGCUgcgGCCGGUguaccuggccugCGGGcGGCg -3'
miRNA:   3'- aCUGgGCGGCGAa--CGGCCG------------GUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 133895 0.74 0.155332
Target:  5'- cGGCgCGCCGCUgcgGCCGGUguaccuggccugCGGGcGGCg -3'
miRNA:   3'- aCUGgGCGGCGAa--CGGCCG------------GUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 56888 0.74 0.159163
Target:  5'- gGGCCCGCCgGCgacggcgacGCCGGCgGGcGGGUg -3'
miRNA:   3'- aCUGGGCGG-CGaa-------CGGCCGgUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 34172 0.74 0.159163
Target:  5'- cGGCUgaGgCGC-UGCgGGCCGGGGGCg -3'
miRNA:   3'- aCUGGg-CgGCGaACGgCCGGUCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.