miRNA display CGI


Results 41 - 60 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 9695 0.69 0.312467
Target:  5'- cGACCCGcCCGUccuCCGGCCAGccacgcgcGGGUc -3'
miRNA:   3'- aCUGGGC-GGCGaacGGCCGGUC--------CCCG- -5'
6359 5' -64.6 NC_001847.1 + 9828 0.66 0.489427
Target:  5'- cGGCCCGCCGCcgccaUGagccaCGGCCAGccuuGCc -3'
miRNA:   3'- aCUGGGCGGCGa----ACg----GCCGGUCcc--CG- -5'
6359 5' -64.6 NC_001847.1 + 10196 0.71 0.238415
Target:  5'- -cGCgCCGCCGCcgccGCCGGgcCCAGGGcGCg -3'
miRNA:   3'- acUG-GGCGGCGaa--CGGCC--GGUCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 10507 0.68 0.386565
Target:  5'- cGGCCCcgcGCUGC-UGCgGGCCAuGGaGCg -3'
miRNA:   3'- aCUGGG---CGGCGaACGgCCGGUcCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 10541 0.69 0.305679
Target:  5'- gGGCCCGgggacCCGCgc-CCGGCCGGcgccGGGCc -3'
miRNA:   3'- aCUGGGC-----GGCGaacGGCCGGUC----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 10686 0.68 0.394585
Target:  5'- cGaACCaGCCGCUUcccgcaccGCCGGCCucggaGGaGGGCc -3'
miRNA:   3'- aC-UGGgCGGCGAA--------CGGCCGG-----UC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 10907 0.72 0.207224
Target:  5'- uUGGCCCGCuCGCUcgGCCGGCCcgaauccucGGccGGCc -3'
miRNA:   3'- -ACUGGGCG-GCGAa-CGGCCGGu--------CC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 11184 0.66 0.496749
Target:  5'- gGGgCUGCCGCUgguccgcgcgggGCUGGUCGagguugaaguGGGGCc -3'
miRNA:   3'- aCUgGGCGGCGAa-----------CGGCCGGU----------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 11268 0.7 0.299005
Target:  5'- gGGcCCCGCCcCaggGCCucagGGCCGGGGGUc -3'
miRNA:   3'- aCU-GGGCGGcGaa-CGG----CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 11315 0.73 0.179623
Target:  5'- -cGCCCGCCGag-GCCGGCgGGcGGCu -3'
miRNA:   3'- acUGGGCGGCgaaCGGCCGgUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 11992 0.67 0.452741
Target:  5'- gGGCUCGCgcaaaccCGCUaGuuGGCuCuGGGGCg -3'
miRNA:   3'- aCUGGGCG-------GCGAaCggCCG-GuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 12331 0.69 0.326384
Target:  5'- -cGCCCGCCgGCUcGCUGGUgagCGGuGGGCc -3'
miRNA:   3'- acUGGGCGG-CGAaCGGCCG---GUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 12478 0.66 0.47135
Target:  5'- cGGCUUcCCGCgUGgCGG-CGGGGGCg -3'
miRNA:   3'- aCUGGGcGGCGaACgGCCgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 12939 0.71 0.231877
Target:  5'- cGugUCGUCGUgcgguggggcgGCgGGCCGGGGGUg -3'
miRNA:   3'- aCugGGCGGCGaa---------CGgCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 12977 0.69 0.305679
Target:  5'- aGGCCauggCGCUGCaguaCCGGCUGGGGGUg -3'
miRNA:   3'- aCUGG----GCGGCGaac-GGCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 13073 0.71 0.246237
Target:  5'- gUGACgCGCUGCUgcgcgagugcgcaacUGCCauuuuuugucgcGGCCGGGGcGCg -3'
miRNA:   3'- -ACUGgGCGGCGA---------------ACGG------------CCGGUCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 13136 0.71 0.24398
Target:  5'- -cGCCgCGCCGCcUGCCgcGGCCGGcgguuGGGCu -3'
miRNA:   3'- acUGG-GCGGCGaACGG--CCGGUC-----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 13780 0.7 0.273437
Target:  5'- cUGaACCUGCUGCUgaacugcguaGCCGGCgcagcgguguaCGGGGGCc -3'
miRNA:   3'- -AC-UGGGCGGCGAa---------CGGCCG-----------GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 13974 0.68 0.394585
Target:  5'- -aGCCCGCCcCUgGCCGGCaagCGGcGGGUc -3'
miRNA:   3'- acUGGGCGGcGAaCGGCCG---GUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 14144 0.67 0.453618
Target:  5'- gGGCCCG-CGCcugGgCGGCCGcuaGGGCg -3'
miRNA:   3'- aCUGGGCgGCGaa-CgGCCGGUc--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.