miRNA display CGI


Results 41 - 60 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 129936 0.66 0.47135
Target:  5'- cGG-CCGCCGCggcgagagaGCCGGCgA-GGGCu -3'
miRNA:   3'- aCUgGGCGGCGaa-------CGGCCGgUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 129339 0.7 0.292444
Target:  5'- cGGCgCGCCaagcgcaaGCgcggUGCCgGGCCcGGGGCu -3'
miRNA:   3'- aCUGgGCGG--------CGa---ACGG-CCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 129322 0.76 0.107132
Target:  5'- gGGCCUGCCGg--GCgcggGGCCGGGGGCg -3'
miRNA:   3'- aCUGGGCGGCgaaCGg---CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 128796 0.7 0.292444
Target:  5'- -cGCCCGCgGCgcggUUGCC-GCC-GGGGCa -3'
miRNA:   3'- acUGGGCGgCG----AACGGcCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 128451 0.66 0.480347
Target:  5'- cGGCCCuGCgCGCgcgcccgGCCGGCCGccGcGGCc -3'
miRNA:   3'- aCUGGG-CG-GCGaa-----CGGCCGGU--CcCCG- -5'
6359 5' -64.6 NC_001847.1 + 128211 0.67 0.410944
Target:  5'- gGACCgCGgaaGCacUGCgGGCCAGGGGg -3'
miRNA:   3'- aCUGG-GCgg-CGa-ACGgCCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 127327 0.74 0.151585
Target:  5'- cGACCggCGCCGaggcgGCCGGCugccgcggCAGGGGCg -3'
miRNA:   3'- aCUGG--GCGGCgaa--CGGCCG--------GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 127243 0.68 0.355579
Target:  5'- cGGCggCCGCCGCgcgccccGCgCGGCUAGGuGGUu -3'
miRNA:   3'- aCUG--GGCGGCGaa-----CG-GCCGGUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 126469 0.67 0.402712
Target:  5'- -aGCCCcCCGUgUGUgGGCUuGGGGCg -3'
miRNA:   3'- acUGGGcGGCGaACGgCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 125554 0.66 0.488516
Target:  5'- --cCCCGCgGCUgcgGCucgaucgCGGCCGcGGGCg -3'
miRNA:   3'- acuGGGCGgCGAa--CG-------GCCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 125500 0.66 0.462439
Target:  5'- -cGCCCgGCUGCUcgagcgGCgGGCCGGcGcGGCg -3'
miRNA:   3'- acUGGG-CGGCGAa-----CGgCCGGUC-C-CCG- -5'
6359 5' -64.6 NC_001847.1 + 125437 0.75 0.127579
Target:  5'- gGACCCG-CGCgugGCUGGCCGGaggacGGGCg -3'
miRNA:   3'- aCUGGGCgGCGaa-CGGCCGGUC-----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 125052 0.71 0.238415
Target:  5'- --cCCCGCCGCUUGUgcucccgcgcgCGGC--GGGGCg -3'
miRNA:   3'- acuGGGCGGCGAACG-----------GCCGguCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 124948 0.66 0.479444
Target:  5'- gGGCCCggcggcggcggcgGCgCGCaaaaGCCGGCgCAGcGGGCc -3'
miRNA:   3'- aCUGGG-------------CG-GCGaa--CGGCCG-GUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 124678 0.7 0.285996
Target:  5'- cGGCCUGCauuCGCUccaGCaacgCGGCCAGGGGa -3'
miRNA:   3'- aCUGGGCG---GCGAa--CG----GCCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 124560 0.7 0.292444
Target:  5'- cGGCCCGCgCGCgcggggggGCCGccggcGCCGGGcccGGCg -3'
miRNA:   3'- aCUGGGCG-GCGaa------CGGC-----CGGUCC---CCG- -5'
6359 5' -64.6 NC_001847.1 + 124443 0.66 0.462439
Target:  5'- uUGGCCgG-CGCggGCCGcGCCcGGGcGCg -3'
miRNA:   3'- -ACUGGgCgGCGaaCGGC-CGGuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 124221 0.69 0.319369
Target:  5'- gGGCCgGCCGaggauucggGCCGGCCgagcgAGcGGGCc -3'
miRNA:   3'- aCUGGgCGGCgaa------CGGCCGG-----UC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 123821 0.75 0.14083
Target:  5'- cGGCgCCaGCCGCccGCCGGCCucGGcGGGCg -3'
miRNA:   3'- aCUG-GG-CGGCGaaCGGCCGG--UC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 123574 0.7 0.292444
Target:  5'- gGGgCCGCCGCgaGCgGgGCCGGaccGGGCu -3'
miRNA:   3'- aCUgGGCGGCGaaCGgC-CGGUC---CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.