miRNA display CGI


Results 21 - 40 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 132525 0.67 0.427717
Target:  5'- cGGuCCCGCCGaagcaccuCCGGCgCGGcGGGCu -3'
miRNA:   3'- aCU-GGGCGGCgaac----GGCCG-GUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 132471 0.68 0.394585
Target:  5'- gGACgaGCCGa-UGCCGGCCGagccgccGGGCg -3'
miRNA:   3'- aCUGggCGGCgaACGGCCGGUc------CCCG- -5'
6359 5' -64.6 NC_001847.1 + 132397 0.83 0.036438
Target:  5'- cGGCgCCGCCGC--GCCgGGCCGGGGGCc -3'
miRNA:   3'- aCUG-GGCGGCGaaCGG-CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132351 0.7 0.282181
Target:  5'- cGGCCgCGCuCGCggcccuggaggccGCCGG-CGGGGGCg -3'
miRNA:   3'- aCUGG-GCG-GCGaa-----------CGGCCgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132320 0.71 0.238415
Target:  5'- -aGCCCGCCgGCggaggUGCCGGCgCGGcuGGCg -3'
miRNA:   3'- acUGGGCGG-CGa----ACGGCCG-GUCc-CCG- -5'
6359 5' -64.6 NC_001847.1 + 132279 0.69 0.319369
Target:  5'- cGGCCCG-CGC--GUCGGCCuGGGcGCu -3'
miRNA:   3'- aCUGGGCgGCGaaCGGCCGGuCCC-CG- -5'
6359 5' -64.6 NC_001847.1 + 132127 0.66 0.502272
Target:  5'- gUGACCgccccuauugggcggCGCUGC-UGCCGcGCaggguGGGGCc -3'
miRNA:   3'- -ACUGG---------------GCGGCGaACGGC-CGgu---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132045 0.69 0.348111
Target:  5'- cGGgCCGCgGCcUGCCGGCCGcGGccuGCg -3'
miRNA:   3'- aCUgGGCGgCGaACGGCCGGU-CCc--CG- -5'
6359 5' -64.6 NC_001847.1 + 131994 0.78 0.087544
Target:  5'- cGGCCCGCCGCgccGCCGGCgCcgccGGGCu -3'
miRNA:   3'- aCUGGGCGGCGaa-CGGCCG-Guc--CCCG- -5'
6359 5' -64.6 NC_001847.1 + 131901 0.66 0.489427
Target:  5'- --cCCUGCCGCcggcgaGCaCGGCgCGGGcGGCg -3'
miRNA:   3'- acuGGGCGGCGaa----CG-GCCG-GUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 131865 0.67 0.453618
Target:  5'- -uGCgCGCCGUgcucGCCGGCCGcGcGGCg -3'
miRNA:   3'- acUGgGCGGCGaa--CGGCCGGUcC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 131707 0.66 0.462439
Target:  5'- gGGCgCUGCCGCacgUGgCGGCCuGcGuGGCa -3'
miRNA:   3'- aCUG-GGCGGCGa--ACgGCCGGuC-C-CCG- -5'
6359 5' -64.6 NC_001847.1 + 131652 0.73 0.171173
Target:  5'- gUGACggCGCCGCUgccGCCGGUCGGGGacGCc -3'
miRNA:   3'- -ACUGg-GCGGCGAa--CGGCCGGUCCC--CG- -5'
6359 5' -64.6 NC_001847.1 + 131451 0.7 0.267326
Target:  5'- gGGCCCGCgGCcguguucgUGCCGGagaUGGGGGa -3'
miRNA:   3'- aCUGGGCGgCGa-------ACGGCCg--GUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 131297 0.7 0.273437
Target:  5'- gGGCCCGCUGCUgacGCCuucuGGCgAGGcguGGCc -3'
miRNA:   3'- aCUGGGCGGCGAa--CGG----CCGgUCC---CCG- -5'
6359 5' -64.6 NC_001847.1 + 131212 0.66 0.489427
Target:  5'- --cCCCGCCGCggcGCCaGCgCGGGcGCg -3'
miRNA:   3'- acuGGGCGGCGaa-CGGcCG-GUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 130992 0.67 0.41928
Target:  5'- gGGCCCGaggaCUGCagcgaUGCCgGGCCcgaggacgauGGGGGCg -3'
miRNA:   3'- aCUGGGC----GGCGa----ACGG-CCGG----------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 130915 0.66 0.489427
Target:  5'- cGugCCGgCGCgcGCCGGCaccgcgcaGGGCu -3'
miRNA:   3'- aCugGGCgGCGaaCGGCCGguc-----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 130845 0.69 0.348111
Target:  5'- ---gCCGCCGCcaucgaaGCCGaGgCGGGGGCg -3'
miRNA:   3'- acugGGCGGCGaa-----CGGC-CgGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 130695 0.66 0.489427
Target:  5'- gGACgcggaCGUCGCggagUGCgccgaGGCCgaGGGGGCg -3'
miRNA:   3'- aCUGg----GCGGCGa---ACGg----CCGG--UCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.