miRNA display CGI


Results 1 - 20 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 135020 0.75 0.126633
Target:  5'- aGGCCCGCgggcggggccggggCGCggggcGCCGGacCCAGGGGCg -3'
miRNA:   3'- aCUGGGCG--------------GCGaa---CGGCC--GGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 134924 0.68 0.386565
Target:  5'- aGGCCCGg-GCUcggGCCcccgggcGCCGGGGGCg -3'
miRNA:   3'- aCUGGGCggCGAa--CGGc------CGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 134772 0.68 0.355579
Target:  5'- cGGCgCGCgGCgcgcgggGCgGGCCccGGGGCg -3'
miRNA:   3'- aCUGgGCGgCGaa-----CGgCCGGu-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 134535 0.68 0.36316
Target:  5'- gGGCCgcgCGCCGCUgcggagcgGCCgcggagGGCCAGGacccGGCg -3'
miRNA:   3'- aCUGG---GCGGCGAa-------CGG------CCGGUCC----CCG- -5'
6359 5' -64.6 NC_001847.1 + 134378 0.76 0.109853
Target:  5'- cGGCgCCGCCgGCggcggGCCGGCCucgcccuagGGGGGCc -3'
miRNA:   3'- aCUG-GGCGG-CGaa---CGGCCGG---------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 134177 0.7 0.292444
Target:  5'- aGcCCCGCCgGCccgggUGCCGGCgCAGucguccccGGGCg -3'
miRNA:   3'- aCuGGGCGG-CGa----ACGGCCG-GUC--------CCCG- -5'
6359 5' -64.6 NC_001847.1 + 134124 0.67 0.436254
Target:  5'- cGGCgCGCCGCggGCggCGGCCuGGuGGa -3'
miRNA:   3'- aCUGgGCGGCGaaCG--GCCGGuCC-CCg -5'
6359 5' -64.6 NC_001847.1 + 134092 0.69 0.340755
Target:  5'- cGGCgCCGCCGCUUGCUcuGGCgagCAGaGGUc -3'
miRNA:   3'- aCUG-GGCGGCGAACGG--CCG---GUCcCCG- -5'
6359 5' -64.6 NC_001847.1 + 134017 0.74 0.151585
Target:  5'- aGGCgCCGCCGCUggUGCUggaGGCCGcGGcGGCg -3'
miRNA:   3'- aCUG-GGCGGCGA--ACGG---CCGGU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 133951 0.67 0.444888
Target:  5'- -cGCCCGacgaGCU-GCCGGCCGcGGcGGUg -3'
miRNA:   3'- acUGGGCgg--CGAaCGGCCGGU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 133895 0.74 0.155332
Target:  5'- cGGCgCGCCGCUgcgGCCGGUguaccuggccugCGGGcGGCg -3'
miRNA:   3'- aCUGgGCGGCGAa--CGGCCG------------GUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 133799 0.67 0.436254
Target:  5'- gGACaUgGCCGCgcaggGCgCGGCgCuGGGGCu -3'
miRNA:   3'- aCUG-GgCGGCGaa---CG-GCCG-GuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 133664 0.7 0.292444
Target:  5'- aGGCgCCGCCGCUgcgGCuCuGCCGcGGcGGCa -3'
miRNA:   3'- aCUG-GGCGGCGAa--CG-GcCGGU-CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 133464 0.69 0.340755
Target:  5'- gGACCCcgagaacugGCCGCgcgacgGcCCGGCCGucGGGCa -3'
miRNA:   3'- aCUGGG---------CGGCGaa----C-GGCCGGUc-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 133161 0.66 0.480347
Target:  5'- cGACCCGCUGCccggGgaGGCgCuGGcGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa--CggCCG-GuCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 133049 0.81 0.047263
Target:  5'- cGGCCCGCCGCcgcGCgGGCCccgcGGGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa-CGgCCGGu---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132879 0.7 0.267326
Target:  5'- cGGCuuCCGCCGCgUGCCGcCCGGGGa- -3'
miRNA:   3'- aCUG--GGCGGCGaACGGCcGGUCCCcg -5'
6359 5' -64.6 NC_001847.1 + 132816 0.72 0.207224
Target:  5'- gGAgCCGCCGC-UGCCcGCCcgcgugcuGGGGCc -3'
miRNA:   3'- aCUgGGCGGCGaACGGcCGGu-------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 132775 0.66 0.47135
Target:  5'- cGAaaagCCGCCGCc-GCCgacgcGGCCGGGccGGCg -3'
miRNA:   3'- aCUg---GGCGGCGaaCGG-----CCGGUCC--CCG- -5'
6359 5' -64.6 NC_001847.1 + 132703 0.67 0.436254
Target:  5'- cGGCgaggCgGCgGCccUGCCGGCCgccgcGGGGGCc -3'
miRNA:   3'- aCUG----GgCGgCGa-ACGGCCGG-----UCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.