miRNA display CGI


Results 1 - 20 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 121162 1.11 0.000302
Target:  5'- aUGACCCGCCGCUUGCCGGCCAGGGGCg -3'
miRNA:   3'- -ACUGGGCGGCGAACGGCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 69874 0.85 0.025934
Target:  5'- aGGCCCGCCGCUgcgGaCCGGCCGcGGGCc -3'
miRNA:   3'- aCUGGGCGGCGAa--C-GGCCGGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 97663 0.84 0.028056
Target:  5'- aGACCCGCCGC-UGCCaGGCCGGGcccGGCc -3'
miRNA:   3'- aCUGGGCGGCGaACGG-CCGGUCC---CCG- -5'
6359 5' -64.6 NC_001847.1 + 132397 0.83 0.036438
Target:  5'- cGGCgCCGCCGC--GCCgGGCCGGGGGCc -3'
miRNA:   3'- aCUG-GGCGGCGaaCGG-CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 29584 0.83 0.036438
Target:  5'- cGGCgCCGCCGC--GCCgGGCCGGGGGCc -3'
miRNA:   3'- aCUG-GGCGGCGaaCGG-CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 115414 0.82 0.039401
Target:  5'- cGGCCCGCCGCgu-CCGGCCAaccucgucgcGGGGCc -3'
miRNA:   3'- aCUGGGCGGCGaacGGCCGGU----------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 133049 0.81 0.047263
Target:  5'- cGGCCCGCCGCcgcGCgGGCCccgcGGGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa-CGgCCGGu---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 30236 0.81 0.047263
Target:  5'- cGGCCCGCCGCcgcGCgGGCCccgcGGGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa-CGgCCGGu---CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 100865 0.81 0.048505
Target:  5'- cGGCCCGCCGgggGUCGGCggCAGGGGCg -3'
miRNA:   3'- aCUGGGCGGCgaaCGGCCG--GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 14208 0.8 0.053796
Target:  5'- gGGCUgGCgGUcagGCCGGCCGGGGGCg -3'
miRNA:   3'- aCUGGgCGgCGaa-CGGCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 101052 0.8 0.058127
Target:  5'- cGcACCCGCCGag-GCCGGCCccGGGGCc -3'
miRNA:   3'- aC-UGGGCGGCgaaCGGCCGGu-CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 5661 0.79 0.071394
Target:  5'- aGGCCCGCCcaggcgcgaagGUggGCCGGCC-GGGGCc -3'
miRNA:   3'- aCUGGGCGG-----------CGaaCGGCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 108474 0.79 0.071394
Target:  5'- aGGCCCGCCcaggcgcgaagGUggGCCGGCC-GGGGCc -3'
miRNA:   3'- aCUGGGCGG-----------CGaaCGGCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 60482 0.79 0.071394
Target:  5'- aUGGCgCCGCCGCUUugugcgcgcGCgGGCCGGcGGGCc -3'
miRNA:   3'- -ACUG-GGCGGCGAA---------CGgCCGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 71394 0.78 0.077084
Target:  5'- cUGGCCCGCgccgccaggcggCGCUguUGCuCGGCCGGGGGg -3'
miRNA:   3'- -ACUGGGCG------------GCGA--ACG-GCCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 44743 0.78 0.077084
Target:  5'- gUGGCCCGCCacaaGCacGUaCGGCCGGGGGCc -3'
miRNA:   3'- -ACUGGGCGG----CGaaCG-GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 111408 0.78 0.087544
Target:  5'- aGGcCCCGCCagggGCggcGCuCGGCCGGGGGCg -3'
miRNA:   3'- aCU-GGGCGG----CGaa-CG-GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 29181 0.78 0.087544
Target:  5'- cGGCCCGCCGCgccGCCGGCgCcgccGGGCu -3'
miRNA:   3'- aCUGGGCGGCGaa-CGGCCG-Guc--CCCG- -5'
6359 5' -64.6 NC_001847.1 + 46208 0.78 0.087544
Target:  5'- cGGCggCCGCCGCcggGCCGGCCGcGGGGa -3'
miRNA:   3'- aCUG--GGCGGCGaa-CGGCCGGU-CCCCg -5'
6359 5' -64.6 NC_001847.1 + 8595 0.78 0.087544
Target:  5'- aGGcCCCGCCagggGCggcGCuCGGCCGGGGGCg -3'
miRNA:   3'- aCU-GGGCGG----CGaa-CG-GCCGGUCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.