miRNA display CGI


Results 1 - 20 of 513 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 8 0.66 0.495831
Target:  5'- -cGCCgCGCCGC--GCgGGCCcccugcgaccccggGGGGGUg -3'
miRNA:   3'- acUGG-GCGGCGaaCGgCCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 129 0.73 0.192992
Target:  5'- cGGcCCCGcCCGCggGCCucgggccccGGCCGGGGGg -3'
miRNA:   3'- aCU-GGGC-GGCGaaCGG---------CCGGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 204 0.66 0.498587
Target:  5'- -cGCCC-CCGCcc-CCGGCgccCGGGGGCc -3'
miRNA:   3'- acUGGGcGGCGaacGGCCG---GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 769 0.7 0.277782
Target:  5'- cGGCCCGCCGCcggcggcGCCGGCCucGucgucguccgacgaGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa-----CGGCCGGucC--------------CCG- -5'
6359 5' -64.6 NC_001847.1 + 897 0.68 0.36316
Target:  5'- gGGgCCGCCGCggccGCCGGCCGccgcccgccGGCg -3'
miRNA:   3'- aCUgGGCGGCGaa--CGGCCGGUcc-------CCG- -5'
6359 5' -64.6 NC_001847.1 + 1184 0.68 0.386565
Target:  5'- aGGCcaCCGCCGCg-GCCGGCagcucgucGGGCg -3'
miRNA:   3'- aCUG--GGCGGCGaaCGGCCGguc-----CCCG- -5'
6359 5' -64.6 NC_001847.1 + 1921 0.71 0.232956
Target:  5'- -aGCCCGCCGCggcgcGgCGGCCAcucGGGCc -3'
miRNA:   3'- acUGGGCGGCGaa---CgGCCGGUc--CCCG- -5'
6359 5' -64.6 NC_001847.1 + 2178 0.66 0.47135
Target:  5'- cGcCCgCGCCGCcugGgCGGCguGcGGGCg -3'
miRNA:   3'- aCuGG-GCGGCGaa-CgGCCGguC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 2221 0.66 0.480347
Target:  5'- aGGCCgccagCGCCGCggcGCUGGgCGcGGGCg -3'
miRNA:   3'- aCUGG-----GCGGCGaa-CGGCCgGUcCCCG- -5'
6359 5' -64.6 NC_001847.1 + 2345 0.71 0.249653
Target:  5'- cGGcuCCCGCCGCgccgGcCCGGCCGcgucGGcGGCg -3'
miRNA:   3'- aCU--GGGCGGCGaa--C-GGCCGGU----CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 2427 0.71 0.255435
Target:  5'- gGGCCCcCCGCggcgGCCGGCa--GGGCc -3'
miRNA:   3'- aCUGGGcGGCGaa--CGGCCGgucCCCG- -5'
6359 5' -64.6 NC_001847.1 + 2535 0.71 0.24398
Target:  5'- gGACCCGgcggcgcucCCGCc-GCCgGGCC-GGGGCg -3'
miRNA:   3'- aCUGGGC---------GGCGaaCGG-CCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 2638 0.68 0.378654
Target:  5'- gGACCgccguCGCCGCUUGCgGcGCCuucgcccGGcGGCu -3'
miRNA:   3'- aCUGG-----GCGGCGAACGgC-CGGu------CC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 2812 0.66 0.507822
Target:  5'- cGGCCgccaGCCGC--GCCGgcaccuccGCCGGcGGGCu -3'
miRNA:   3'- aCUGGg---CGGCGaaCGGC--------CGGUC-CCCG- -5'
6359 5' -64.6 NC_001847.1 + 3116 0.73 0.192992
Target:  5'- cGGCCCGCCGCg-GCCGagagcaccgggaGCCcGGcGGCg -3'
miRNA:   3'- aCUGGGCGGCGaaCGGC------------CGGuCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 3238 0.76 0.104475
Target:  5'- -cGCCCGCgccgUGCUcGCCGGCggCAGGGGCg -3'
miRNA:   3'- acUGGGCG----GCGAaCGGCCG--GUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 3268 0.67 0.444888
Target:  5'- -cGCCggCGCCGCgcgGCCGGCgAGcacGGCg -3'
miRNA:   3'- acUGG--GCGGCGaa-CGGCCGgUCc--CCG- -5'
6359 5' -64.6 NC_001847.1 + 3321 0.74 0.150477
Target:  5'- gGGCgCCGCUGCcgccggcGCCGGCCuccggguaggccauGGGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa-----CGGCCGG--------------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 3720 0.69 0.325677
Target:  5'- cGG-CCGCCGCguagcGCgCGGCCGccucgcggaucucGGGGCa -3'
miRNA:   3'- aCUgGGCGGCGaa---CG-GCCGGU-------------CCCCG- -5'
6359 5' -64.6 NC_001847.1 + 3781 0.67 0.427717
Target:  5'- gGugUCGcCCGCgccGCCgaagcgcacgcGGCCGGGcGGCg -3'
miRNA:   3'- aCugGGC-GGCGaa-CGG-----------CCGGUCC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.