miRNA display CGI


Results 21 - 40 of 513 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6359 5' -64.6 NC_001847.1 + 3791 0.69 0.319369
Target:  5'- aUGugCUGCaCGaCggcgUGCCGGCaC-GGGGCg -3'
miRNA:   3'- -ACugGGCG-GC-Ga---ACGGCCG-GuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 3883 0.72 0.2167
Target:  5'- cGGCCCGUCGCgcggcGCCGcggcguaGCCAGcgcGGGCg -3'
miRNA:   3'- aCUGGGCGGCGaa---CGGC-------CGGUC---CCCG- -5'
6359 5' -64.6 NC_001847.1 + 3932 0.66 0.507822
Target:  5'- -cGCCCG-CGCUggcGCCGcGgCGGGGGg -3'
miRNA:   3'- acUGGGCgGCGAa--CGGC-CgGUCCCCg -5'
6359 5' -64.6 NC_001847.1 + 4244 0.7 0.277782
Target:  5'- gGGCaCCGCCGCcccccGCCucaguccccgcuucGGCCuugAGGGGCg -3'
miRNA:   3'- aCUG-GGCGGCGaa---CGG--------------CCGG---UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 4783 0.71 0.238415
Target:  5'- aUGACCgGCCGUgggUGCgugcggUGGCCuGGGGg -3'
miRNA:   3'- -ACUGGgCGGCGa--ACG------GCCGGuCCCCg -5'
6359 5' -64.6 NC_001847.1 + 5209 0.72 0.202382
Target:  5'- cGGCUcucuCGCCGCggcgGCCGGC--GGGGCg -3'
miRNA:   3'- aCUGG----GCGGCGaa--CGGCCGguCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 5661 0.79 0.071394
Target:  5'- aGGCCCGCCcaggcgcgaagGUggGCCGGCC-GGGGCc -3'
miRNA:   3'- aCUGGGCGG-----------CGaaCGGCCGGuCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 5802 0.67 0.453618
Target:  5'- cGGCaCCGCgcuugCGCUUGgCGcGCCGGGuGCg -3'
miRNA:   3'- aCUG-GGCG-----GCGAACgGC-CGGUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 6676 0.76 0.121394
Target:  5'- aGGCUagGCCGCggcgGCCGGCCGGGcGCg -3'
miRNA:   3'- aCUGGg-CGGCGaa--CGGCCGGUCCcCG- -5'
6359 5' -64.6 NC_001847.1 + 6978 0.7 0.292444
Target:  5'- --cCCUGCCauaGCUUGCCGGCguGGGu- -3'
miRNA:   3'- acuGGGCGG---CGAACGGCCGguCCCcg -5'
6359 5' -64.6 NC_001847.1 + 7220 0.67 0.402712
Target:  5'- gGGCCguccauggCGCUGCagcgGCUGGUCGGGuGGCu -3'
miRNA:   3'- aCUGG--------GCGGCGaa--CGGCCGGUCC-CCG- -5'
6359 5' -64.6 NC_001847.1 + 7806 0.68 0.370852
Target:  5'- --cCCUGCCGCggcaGCCGGCCGccucGGCg -3'
miRNA:   3'- acuGGGCGGCGaa--CGGCCGGUcc--CCG- -5'
6359 5' -64.6 NC_001847.1 + 8049 0.69 0.312467
Target:  5'- gGACCCaaaGCCGCg---CGGCCcgcgcgcagagGGGGGCa -3'
miRNA:   3'- aCUGGG---CGGCGaacgGCCGG-----------UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 8473 0.71 0.249653
Target:  5'- gGGCCgGggGCggcGCuCGGCCGGGGGCg -3'
miRNA:   3'- aCUGGgCggCGaa-CG-GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 8595 0.78 0.087544
Target:  5'- aGGcCCCGCCagggGCggcGCuCGGCCGGGGGCg -3'
miRNA:   3'- aCU-GGGCGG----CGaa-CG-GCCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 8932 0.66 0.474939
Target:  5'- cGAcCCCGCCaagugaGCUccgcccacccaGCCcccacccucaucucgGGCCGGGGGCg -3'
miRNA:   3'- aCU-GGGCGG------CGAa----------CGG---------------CCGGUCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 9026 0.66 0.507822
Target:  5'- cGACCCcCUGCUagacgcgaUGCgGcGCgaGGGGGCa -3'
miRNA:   3'- aCUGGGcGGCGA--------ACGgC-CGg-UCCCCG- -5'
6359 5' -64.6 NC_001847.1 + 9354 0.7 0.266721
Target:  5'- cGGCCCGCCgacucGCUUGCCauGGCCcGGuuccacaGGCc -3'
miRNA:   3'- aCUGGGCGG-----CGAACGG--CCGGuCC-------CCG- -5'
6359 5' -64.6 NC_001847.1 + 9574 0.67 0.401895
Target:  5'- -aGCCCGCCGCccgcgGCCGcgaucgagccgcaGCCGcGGGGa -3'
miRNA:   3'- acUGGGCGGCGaa---CGGC-------------CGGU-CCCCg -5'
6359 5' -64.6 NC_001847.1 + 9628 0.73 0.187095
Target:  5'- -cGCCCGCCGCcgcGCCGGCCcGccgcucgagcagccGGGCg -3'
miRNA:   3'- acUGGGCGGCGaa-CGGCCGGuC--------------CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.